Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30213
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56810.1 68418.m07089 F-box family protein contains F-box dom...    31   1.1  
At2g30040.1 68415.m03653 protein kinase family protein contains ...    30   1.9  
At3g46140.1 68416.m04993 protein kinase-related contains eukaryo...    29   4.3  
At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding ...    28   7.5  
At5g55090.1 68418.m06867 protein kinase family protein contains ...    27   9.9  
At3g45790.1 68416.m04955 protein kinase-related contains eukaryo...    27   9.9  
At3g45670.1 68416.m04935 protein kinase-related contains eukaryo...    27   9.9  
At2g24285.1 68415.m02902 hypothetical protein                          27   9.9  
At1g01580.1 68414.m00075 ferric-chelate reductase, putative simi...    27   9.9  

>At5g56810.1 68418.m07089 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 435

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
 Frame = -1

Query: 660 NIYNSLFNYNLMST-YPVRFSTVAFDNSTKI 571
           NI+++L  +++ ST YPV +ST++F N+  +
Sbjct: 109 NIHSTLLEFSIKSTGYPVYYSTISFPNNLDV 139


>At2g30040.1 68415.m03653 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 463

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -2

Query: 284 ALVDLHSNNILHCQVRNQNV 225
           AL  +HSN I+HC V+++NV
Sbjct: 127 ALSHVHSNGIVHCDVKSKNV 146


>At3g46140.1 68416.m04993 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 376

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -2

Query: 272 LHSNNILHCQVRNQNVN*SPVSKTVHLAG 186
           +H  NI+HC ++ +N+  +PV   +  +G
Sbjct: 216 IHRANIIHCDIKPENIFLTPVENRIRPSG 244


>At2g22300.1 68415.m02646 ethylene-responsive calmodulin-binding
           protein, putative (SR1) identical to partial sequence of
           ethylene-induced calmodulin-binding protein GI:11545505
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF03859: CG-1 domain, PF00612: IQ calmodulin-binding
           motif, and PF00023: Ankyrin repeat
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +3

Query: 45  YNNIHKIVEKSIINYSFRSEAGRVASVLYLINDGFAAEIDLLPSIRSSSKVDGLT 209
           Y N HK +   +  Y+ R+        L  +ND  A  +++ PS  SSS  D LT
Sbjct: 742 YANGHKGIAGYLSEYALRAHVS-----LLSLNDKNAETVEMAPSPSSSSLTDSLT 791


>At5g55090.1 68418.m06867 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 448

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 281 LVDLHSNNILHCQVRNQNV 225
           L+ LH   I+HC V++QNV
Sbjct: 115 LMYLHDQGIVHCDVKSQNV 133


>At3g45790.1 68416.m04955 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 376

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 272 LHSNNILHCQVRNQNVN*SPVSKTVHLAG 186
           +H  NI+HC ++ +N+  +PV   +   G
Sbjct: 216 IHRANIIHCDIKPENILLAPVENRIRPNG 244


>At3g45670.1 68416.m04935 protein kinase-related contains eukaryotic
           protein kinase domain, INTERPRO:IPR000719
          Length = 379

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 272 LHSNNILHCQVRNQNVN*SPV 210
           +H  NI+HC+++  N+  SPV
Sbjct: 212 IHRRNIIHCEIKPDNLLLSPV 232


>At2g24285.1 68415.m02902 hypothetical protein
          Length = 122

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 526 FHDFVIQRHVSRYVGWLLGCC 464
           FHD V+  H++  +G+  G C
Sbjct: 85  FHDHVLSEHIADQIGYTFGTC 105


>At1g01580.1 68414.m00075 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile: PF01794 ferric
           reductase like transmembrane component
          Length = 725

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +3

Query: 123 VLYLINDGFAAEIDLLPSIRSSSKVDGLTDRALIYILVSNLTV 251
           ++++I  G      + P   +++K+  LT + +IYILV ++++
Sbjct: 567 LIFMIIIGIITRYYIYPIDHNTNKIYSLTSKTIIYILVISVSI 609


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,755,958
Number of Sequences: 28952
Number of extensions: 300210
Number of successful extensions: 681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)