Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30212
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 148 7e-37
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 145 7e-36
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 132 4e-32
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 132 4e-32
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 124 1e-29
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 66 5e-12
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 42 1e-04
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 30 0.31
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.54
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.54
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.94
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.94
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 1.6
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 1.6
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.8
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 5.0
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 6.6
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 6.6
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 148 bits (359), Expect = 7e-37
Identities = 70/80 (87%), Positives = 75/80 (93%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ GE NVLIFDLGGGTFDVS+
Sbjct: 148 FNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQGESNVLIFDLGGGTFDVSL 207
Query: 690 LTIEDGIFEVKSTAGDTHLG 749
LTIE+GIFEVK+TAGDTHLG
Sbjct: 208 LTIEEGIFEVKATAGDTHLG 227
Score = 139 bits (336), Expect = 4e-34
Identities = 63/86 (73%), Positives = 73/86 (84%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSKPKIKVAYKGEDKTFFPEEVSSM 429
PHNTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S KP ++V YKGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSM 120
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VL KM+ETAEAYLG V +AV+TVPA
Sbjct: 121 VLMKMRETAEAYLGGKVTDAVVTVPA 146
Score = 112 bits (269), Expect = 6e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 145 bits (351), Expect = 7e-36
Identities = 69/80 (86%), Positives = 74/80 (92%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGLD+ E NVLIFDLGGGTFDVS+
Sbjct: 148 FNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGLDRSNQHETNVLIFDLGGGTFDVSL 207
Query: 690 LTIEDGIFEVKSTAGDTHLG 749
LTIE+GIFEVK+TAGDTHLG
Sbjct: 208 LTIEEGIFEVKATAGDTHLG 227
Score = 131 bits (317), Expect = 9e-32
Identities = 59/86 (68%), Positives = 71/86 (82%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSKPKIKVAYKGEDKTFFPEEVSSM 429
PHNTIFDAKRLIGR+F D VQ+DMKHWPF+V+ KP I+V +KGE KTF PEE+SSM
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSM 120
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VL KM+E+AEA+LG V +AV+TVPA
Sbjct: 121 VLLKMRESAEAFLGGKVTDAVVTVPA 146
Score = 112 bits (269), Expect = 6e-26
Identities = 51/58 (87%), Positives = 55/58 (94%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 61
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 132 bits (320), Expect = 4e-32
Identities = 59/80 (73%), Positives = 76/80 (95%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLDK T E++++++DLGGGTFDVS+
Sbjct: 181 FNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT-EKHIVVYDLGGGTFDVSL 239
Query: 690 LTIEDGIFEVKSTAGDTHLG 749
L+I++G+FEV +T+GDTHLG
Sbjct: 240 LSIDNGVFEVLATSGDTHLG 259
Score = 113 bits (271), Expect = 3e-26
Identities = 50/86 (58%), Positives = 69/86 (80%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSKPKIKVAYKGEDKTFFPEEVSSM 429
P NTIFD KRLIGRKF++ T+ D+K +PF +V+D ++P ++V G+ K F PEE+S+M
Sbjct: 94 PENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAM 153
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
+L+KMK+TAEAYLGK V +AV+TVPA
Sbjct: 154 ILSKMKQTAEAYLGKPVTHAVVTVPA 179
Score = 98.3 bits (234), Expect = 1e-21
Identities = 43/57 (75%), Positives = 50/57 (87%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNP 94
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 132 bits (320), Expect = 4e-32
Identities = 63/80 (78%), Positives = 70/80 (87%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
F+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGLD K +NVLIFDLGGGTFDVS+
Sbjct: 152 FSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGLDAKSDKPKNVLIFDLGGGTFDVSL 211
Query: 690 LTIEDGIFEVKSTAGDTHLG 749
L I+ G+FEV +TAGDTHLG
Sbjct: 212 LKIQGGVFEVLATAGDTHLG 231
Score = 114 bits (275), Expect = 1e-26
Identities = 52/86 (60%), Positives = 65/86 (75%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSKPKIKVAYKGEDKTFFPEEVSSM 429
P NT+FDAKRLIGR++ED Q D+KHWPF+V+ + P I+V Y GE K F +E+S+M
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAM 124
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
VLTKMKE +EA L K V+ AVITVPA
Sbjct: 125 VLTKMKEISEAKLNKRVEKAVITVPA 150
Score = 100 bits (239), Expect = 3e-22
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 253
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNP 65
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 124 bits (300), Expect = 1e-29
Identities = 58/80 (72%), Positives = 69/80 (86%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDVSI 689
FNDSQRQATK AG I+GLNVLR++NEPTAAA+AYGLDKK + V +FDLGGGTFD+SI
Sbjct: 194 FNDSQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKK--NDAIVAVFDLGGGTFDISI 251
Query: 690 LTIEDGIFEVKSTAGDTHLG 749
L + +G+FEV+ST GDTHLG
Sbjct: 252 LELNNGVFEVRSTNGDTHLG 271
Score = 82.2 bits (194), Expect = 7e-17
Identities = 40/86 (46%), Positives = 58/86 (67%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGSKPKIKVAYKGEDKTFFPEEVSSM 429
P NT F KRLIGR+F++ VQ D+K P+++V + S + +G KT+ P ++
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIV-EHSNGDAWLEARG--KTYSPSQIGGF 166
Query: 430 VLTKMKETAEAYLGKTVQNAVITVPA 507
+L+KM+ETA YLGK V+NAV+TVPA
Sbjct: 167 ILSKMRETASTYLGKDVKNAVVTVPA 192
Score = 73.3 bits (172), Expect = 3e-14
Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Frame = +2
Query: 71 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 247
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 248 NPTTQY 265
NP +
Sbjct: 109 NPENTF 114
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 66.1 bits (154), Expect = 5e-12
Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +3
Query: 510 FNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKGTGE----RNVLIFDLGGGTF 677
F D QR+A +A I+GLN LR++N+ AAA+ YG+ K E R V I D G +
Sbjct: 152 FTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYGITKTDLPEPESPRRVAIVDFGHSNY 211
Query: 678 DVSILTIEDGIFEVKSTAGDTHLG 749
VSI+ G F +KST D +LG
Sbjct: 212 SVSIVEFSRGQFHIKSTVCDRNLG 235
Score = 51.2 bits (117), Expect = 2e-07
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +2
Query: 68 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 247
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 248 N 250
N
Sbjct: 63 N 63
Score = 39.5 bits (88), Expect = 5e-04
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 NTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGSKPKIKVAYKGEDKTFFPEEVSSMV 432
NT+ KRL GR ++D ++ + ++ KV Y E+ F ++ +
Sbjct: 66 NTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLIAAY 125
Query: 433 LTKMKETAEAYLGKTVQNAVITVPA 507
TK+K AEA L +V + VI++PA
Sbjct: 126 FTKIKAIAEAELIGSVSDVVISIPA 150
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 250
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN 82
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 391 EDKTFFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVP 504
++K E S L ++ E+AE +LG V V++VP
Sbjct: 134 KEKILTAHEASVRHLRRLTESAEDFLGTKVNGCVMSVP 171
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 259
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 260 QYSMPNV 280
+S+ NV
Sbjct: 84 -HSIRNV 89
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.54
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 11/154 (7%)
Frame = -1
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVI 492
+++ + + S SS L T S S+S I S + F S + I
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSST------SSTFSSASTSSPSSISSSI 618
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPL-----------YATLILGLLPSLT 345
++ T+L + S + +S+ + S +LSS + Y++ ++ +L
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIPSSSTLV 678
Query: 344 TSKGQCFMSACTVASSNLRPMRRLASNIVLWGSS 243
+S +S+ VASS+ P+ +S + + +S
Sbjct: 679 SSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSAS 712
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.54
Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Frame = -1
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVI 492
T++ V + +S+ V T + +SS ++ S + + ++ + ++ T I
Sbjct: 3241 TSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPI 3300
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLLPSLTTSKGQCFMSAC 312
T+ T+ S + S+ +TSS S+P+ ++ +L ++T+S S+
Sbjct: 3301 TSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTAITSS--SILNSST 3358
Query: 311 TVASSN-LRPMRRLASNIVLWGSSP 240
V SS+ L + S+ V+ S+P
Sbjct: 3359 PVTSSSVLNSSTPITSSTVVNSSTP 3383
Score = 28.7 bits (61), Expect = 0.94
Identities = 31/144 (21%), Positives = 64/144 (44%)
Frame = -1
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVI 492
T++ V + +S+ V + + +SS ++ S + + ++ + ++ T I
Sbjct: 829 TSSTVVNTSTPITSSTVVNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 888
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLLPSLTTSKGQCFMSAC 312
T+ V S + S+ +TSS S+P+ ++ +L +T+S G +
Sbjct: 889 TSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTGLNTSTPI 948
Query: 311 TVASSNLRPMRRLASNIVLWGSSP 240
T +SS L + S+ VL S+P
Sbjct: 949 T-SSSVLNSSTPITSSTVLNSSTP 971
Score = 27.1 bits (57), Expect = 2.9
Identities = 30/144 (20%), Positives = 63/144 (43%)
Frame = -1
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVI 492
T++ V + +S+ + T + +SS ++ S + + ++ + ++ T I
Sbjct: 1765 TSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPI 1824
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLLPSLTTSKGQCFMSAC 312
T+ V S + S+ +TSS S+P+ ++ +L +T+S +
Sbjct: 1825 TSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPI 1884
Query: 311 TVASSNLRPMRRLASNIVLWGSSP 240
T +SS L + S+ VL S+P
Sbjct: 1885 T-SSSVLNSSTPITSSTVLNSSTP 1907
Score = 27.1 bits (57), Expect = 2.9
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 1/145 (0%)
Frame = -1
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVI 492
T++ V + +S+ V T + +SS ++ S + + ++ + ++ T I
Sbjct: 2269 TSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 2328
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLLPSLTTSKGQCFMSAC 312
T+ V S + S+ +TSS S+P+ ++ L S+T+S S+
Sbjct: 2329 TSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTSITSS--SVLNSST 2386
Query: 311 TVASSN-LRPMRRLASNIVLWGSSP 240
+ SS + + S+ VL S+P
Sbjct: 2387 PITSSTVVNTSTPITSSSVLNSSTP 2411
Score = 25.8 bits (54), Expect = 6.6
Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 1/145 (0%)
Frame = -1
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVI 492
T++ V + +S+ V T + +SS ++ S + + ++ + + T I
Sbjct: 2749 TSSSVLNSSTPITSSTVVNTSTPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPI 2808
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLLPSLTTSKGQCFMSAC 312
T+ V S + S+ +TSS S+P+ ++ L +T+S S+
Sbjct: 2809 TSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSSTALNTSTPITSS--SVLNSST 2866
Query: 311 TVASSN-LRPMRRLASNIVLWGSSP 240
+ SS L + S+ VL S+P
Sbjct: 2867 PITSSTALNTSTSITSSSVLNSSTP 2891
Score = 25.4 bits (53), Expect = 8.7
Identities = 31/145 (21%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Frame = -1
Query: 671 TAAEVKDKYISFSSTLFVKTVSNRSSSRFIDDSENVQARDGTCIFCGLSLRVIEDAGTVI 492
T++ V + +S+ V T + +SS ++ S + + ++ + ++ T I
Sbjct: 1657 TSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPI 1716
Query: 491 TAFCTVLPR*ASAVSFIFVSTMELTSSGKKVLSSPLYATLILGLLPSLTTSKGQCFMSAC 312
T+ V S + S+ +TSS S+P+ ++ L +T+S S+
Sbjct: 1717 TSSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSS--SVLNSST 1774
Query: 311 TVASSN-LRPMRRLASNIVLWGSSP 240
+ SS L + S+ VL S+P
Sbjct: 1775 PITSSTALNTSTPITSSSVLNSSTP 1799
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 179 PSYVAFTDTERLIGDAAKNQVAMNPTTQYSMPNVSSDVSSKMLLC 313
P +A T ER++ AAK A+N T Y++ ++ D K++ C
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIEC 1296
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 75 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 170
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 551 GTCIFCGLSLRVIEDAGTVITAFCTVLPR*ASAVSFIF 438
G C+FCGL+ D+ T+ C R A+ +S ++
Sbjct: 1827 GLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLVY 1864
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 551 GTCIFCGLSLRVIEDAGTVITAFCTVLPR*ASAVSFIF 438
G C+FCGL+ D+ T+ C R A+ +S ++
Sbjct: 1827 GLCLFCGLTKFEHADSDMAYTSDCRSWARKANLISLVY 1864
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 108 TLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRTRWR*TPQHNI 266
T +L S+STG+ T++ T L + PS S+ P T + TP +NI
Sbjct: 282 TSSLTSNSTGK-----TSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNI 329
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/48 (25%), Positives = 24/48 (50%)
Frame = -1
Query: 362 LLPSLTTSKGQCFMSACTVASSNLRPMRRLASNIVLWGSSPPGSWRHL 219
L L S+ + ++S V +RP + + +IV+ GS++H+
Sbjct: 1169 LFKDLNASQAEAYLSKMQVGDLVIRPSSKGSDHIVVTWKVAEGSYQHI 1216
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 161 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 3
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 224 AAKNQVAMNPTTQYSMPNVSSDVSSKML 307
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 667 AVPSTCPSLPSRMVSSR*NPPPATPTW 747
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,348,006
Number of Sequences: 5004
Number of extensions: 73255
Number of successful extensions: 304
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 297
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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