Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30211
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    29   0.39 
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    27   1.6  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   4.8  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.4  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   8.4  

>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 81  VSWKLIALWENNKVYFKILNTERNQYLVLGVGTNWNG 191
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 66  KTSPRVSWKLIALWENNKVYFKILNTERNQYLVLGVGTN 182
           K SP+V+WK   +W + K   K +++      +LG G++
Sbjct: 28  KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 323 RTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF 418
           +T+ P G    +GY   +   P HY + I  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 157  TWYWESALTGTATIWPSESTASIVS 231
            T Y+ +   G ATI PS  TASI+S
Sbjct: 1217 TLYYTTLGIGIATISPSIGTASIIS 1241


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 239 LGSETIDAV-DSEGHMVAVPVSADSQYQVLVTFSVQDLEVDLVVLPQSD 96
           LGS+   +  ++EG  ++ P+ A+S  +    F+++   VD+  L Q+D
Sbjct: 366 LGSKNFSSTGEAEGTGLSTPIIAESLKENDEFFAMEKENVDIQYLSQND 414


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 384 LPITLPLYPQAMR*PEGSTVLDSVKALLYSRL*M*NKTSLSYLEAAGT 241
           LP+ +PLY + +        L +   LL  +L    K  L Y++A GT
Sbjct: 144 LPLDIPLYDRIIYVEPVPATLSNKSLLLAGKLRKYLKEFLPYVDAIGT 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,018
Number of Sequences: 5004
Number of extensions: 32798
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)