Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30211
(500 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical pr... 29 1.9
U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical pr... 28 4.4
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 28 4.4
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ... 28 4.4
Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical p... 27 5.8
Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical p... 27 5.8
AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear recep... 27 5.8
>U13019-4|AAC24451.1| 222|Caenorhabditis elegans Hypothetical
protein T12A2.15b protein.
Length = 222
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 54 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 152
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 120 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 152
>U13019-3|AAC24452.2| 713|Caenorhabditis elegans Hypothetical
protein T12A2.15a protein.
Length = 713
Score = 29.1 bits (62), Expect = 1.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 54 DGKDKTSPRVSWKLIALWENNKVYFKILNTERN 152
D KD+ +P VS KL+AL N +V+ K T +N
Sbjct: 611 DKKDQCNPYVSVKLVALDGNKEVFKKKTPTAKN 643
>Z77670-1|CAB01247.1| 484|Caenorhabditis elegans Hypothetical
protein W05E10.1 protein.
Length = 484
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 451 WFVVETLYYNLESLYT--PSVMFGTSDYSAVVSPGHAVT 341
WFV++T+ N+ESL + M+ + + A+V G+ T
Sbjct: 260 WFVIQTIAVNIESLCSVFTIAMYNWTSHQAIVYGGYIET 298
>Z75543-5|CAA99872.2| 270|Caenorhabditis elegans Hypothetical
protein K01D12.5 protein.
Length = 270
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = -2
Query: 460 HSHWFVVETLYYNLESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQCQSLA 302
+ + T Y N++++ P M+G++ S VVS G++ + G N+ ++A
Sbjct: 83 YPQYLPTHTGYSNIQTVGQPYQMYGSAPGSNVVSGGNSESYGYNQQAPVPTVA 135
>Z75529-3|CAA99786.2| 1099|Caenorhabditis elegans Hypothetical
protein C44H9.4 protein.
Length = 1099
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +3
Query: 45 AYGDGKDKTSPRVSWKLIALWENNK---VYFKILNTERNQYLVLGVGTNWNGDH 197
++G + PR ++ I+ + + YF++L+ E N+Y+++ N +G H
Sbjct: 129 SWGPNFNSPKPRQVFRDISTYSYERGIRAYFRVLSAEDNKYILIACHANLHGLH 182
>Z72513-1|CAA96669.1| 260|Caenorhabditis elegans Hypothetical
protein T04F3.2 protein.
Length = 260
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 410 LYPKRNVRDFRLLCRCIPRPCGDPRAQPSSTVSKP 306
LY K D + C C+ G+P+ S+T KP
Sbjct: 83 LYDKVQCYDVSIYCWCVDELSGEPKLGSSTTRGKP 117
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 421 LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 314
L+++ S+ G S AV GH T GLN QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645
>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
protein F07B7.12 protein.
Length = 1900
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 421 LESLYTPSVMFGTSDYSAVVSPGHAVTRGLNRPRQC 314
L+++ S+ G S AV GH T GLN QC
Sbjct: 610 LDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQC 645
>Z68270-11|CAJ90499.1| 394|Caenorhabditis elegans Hypothetical
protein ZC410.1b protein.
Length = 394
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 96 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 239
IA+WE + V F LN ++ +L T W + N + R Q
Sbjct: 280 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 327
>Z68270-10|CAA92572.2| 459|Caenorhabditis elegans Hypothetical
protein ZC410.1a protein.
Length = 459
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 96 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 239
IA+WE + V F LN ++ +L T W + N + R Q
Sbjct: 345 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 392
>AY305838-1|AAR11983.1| 459|Caenorhabditis elegans nuclear receptor
NHR-11 protein.
Length = 459
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +3
Query: 96 IALWENNKVYFKILNTERNQYLVLGVGTNWNGDHMAFGVNSVDSFRAQ 239
IA+WE + V F LN ++ +L T W + N + R Q
Sbjct: 345 IAIWEESIVPFSKLNVTFEEFCLLKALTVWQATYFKLTENGREKCRRQ 392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,629,981
Number of Sequences: 27780
Number of extensions: 181993
Number of successful extensions: 420
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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