Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30209
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 553 VLVKTNLMSRIYRSRGLKVKKP 618
           +L KTN +SRI+ +     K+P
Sbjct: 739 LLTKTNRISRIFNASKHSAKRP 760


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 559 VKTNLMSRIYRSRGLKVKKPCVLVSKDAT 645
           ++T++MSR Y +R + ++K   +   D+T
Sbjct: 296 LQTSIMSRHYSTRAIVIEKGQSIWDYDST 324


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 282 RDLTIFYNGDTVHNFI*ITFYTKSNFYSSNSKVKMIVLQIEL 407
           R  T+FY  + +   + I+F T   FY  +   + + L I +
Sbjct: 241 RRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISI 282


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 282 RDLTIFYNGDTVHNFI*ITFYTKSNFYSSNSKVKMIVLQIEL 407
           R  T+FY  + +   + I+F T   FY  +   + + L I +
Sbjct: 241 RRKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKVTLSISI 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,283
Number of Sequences: 438
Number of extensions: 3617
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)