Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30208
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    36   0.004
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    27   2.4  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    26   4.2  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   4.2  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   7.3  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   7.3  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   9.7  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   9.7  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 272  DDGELHALKRVP-PRGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEIIDAMP 448
            DD  L A+K++   R       + P   G + Y +   SDSYMG+D + + +  +++ + 
Sbjct: 2110 DDKTLLAIKKITLGRSLTTKMEFVPPAMGTLKYKLSCFSDSYMGVDYEKEFECNVLEPLD 2169

Query: 449  SENVD 463
            +E  D
Sbjct: 2170 TEMED 2174


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 317 TAQLTFYTPSRTGRIIYTVYIMSDSYMGLD 406
           T ++ F  P   G   + ++IMS+SY+G D
Sbjct: 512 TFRIPFQVPPVAGTFSFQLHIMSNSYVGED 541


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 195 GNPNNVLCPRFPRGKNEGWF*RSAPWTMESCTP*N 299
           G P+NVLC     G     F +S+P    +CT  N
Sbjct: 13  GEPSNVLCHNLHTGTLVSTFRQSSPAKNATCTTLN 47


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +3

Query: 33  DLPTTDIKLHVRGLWFDADHEQD-KRITQPPARDQWMPLHADQEYTLLLDMQRRGGNPNN 209
           DLP+      V  + FD+D E+D +R+    A++    +   +E++ L D  R+  +PNN
Sbjct: 754 DLPSATNTASVSEINFDSDEEEDIRRLAVESAQE---AVQKAREHSQLFDANRQ-QSPNN 809


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/47 (19%), Positives = 24/47 (51%)
 Frame = +2

Query: 353 GRIIYTVYIMSDSYMGLDQQYDLQFEIIDAMPSENVDKVYDTIEKTL 493
           G ++YT+    + Y  +++  D +  I   +  +NVD +   +++ +
Sbjct: 697 GILLYTIVYRENPYYNIEEILDAKLRIPFELSKDNVDLICRMLDRNV 743


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 88  IMNKTNGSRNLPPGISGCLCMLI 156
           I+N+TNG + +P  I G +  LI
Sbjct: 423 ILNETNGGKQIPALIVGIIACLI 445


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 207 CSDCRLYVAYPIAGYIPDQHAKAST 133
           CS+C  Y  Y   GY P  +  A T
Sbjct: 437 CSNCNYYYPYTPVGYYPVYNRYAMT 461


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 316 SSRRDPFQGVQLSIVHGAERQNQPSFLPRGNLGHS 212
           SS+  PF   + + VH    +N PS + R N  HS
Sbjct: 408 SSKASPFN--KPNSVHSEASRNTPSSIDRENASHS 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,946
Number of Sequences: 5004
Number of extensions: 44181
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)