Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30208
(550 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 58 5e-09
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 58 5e-09
02_01_0067 + 487231-487530,487580-487675,487716-487862 44 6e-05
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 37 0.009
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 30 1.1
07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941 28 4.3
06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119 27 7.5
04_03_0358 - 14856490-14856573,14856829-14856874,14857116-148572... 27 7.5
12_02_0506 - 19794383-19794670,19795066-19795140,19795337-197987... 27 9.9
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 27 9.9
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 58.0 bits (134), Expect = 5e-09
Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +2
Query: 227 PARQERGLVLTLGTVDDGELHALKRVP--PRGTAQLTFYTPSRTGRIIYTVYIMSDSYMG 400
P +E G L +G +L A+KRV R +L F P+ GR Y VY+MSDSY+G
Sbjct: 2068 PKPKEEGWWLVIGDRSTDQLLAIKRVKLQKRARVKLEFAAPAEAGRKDYMVYLMSDSYLG 2127
Query: 401 LDQQYDLQFEIIDA 442
DQ+Y+ ++ DA
Sbjct: 2128 CDQEYEFAVDVKDA 2141
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 58.0 bits (134), Expect = 5e-09
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Frame = +2
Query: 227 PARQERGLVLTLGTVDDGELHALKRVP--PRGTAQLTFYTPSRTGRIIYTVYIMSDSYMG 400
P +E G L +G +L A+KRV R +L F S GR Y +Y+MSDSY+G
Sbjct: 2101 PKPKEEGWWLVIGDSSTNQLLAIKRVALQKRARVKLEFTAASEAGRKEYMIYLMSDSYLG 2160
Query: 401 LDQQYDLQFEIIDA 442
DQ+Y+ +++DA
Sbjct: 2161 CDQEYEFTVDVMDA 2174
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 159 EYTLLLDMQRRGGNPNNVLCPRFPRGKNEGWF 254
+ TL DM V PR+P+ K EGW+
Sbjct: 2078 QVTLERDMTNLPSEVGPVHAPRYPKPKEEGWW 2109
>02_01_0067 + 487231-487530,487580-487675,487716-487862
Length = 180
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +2
Query: 311 RGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEIIDA 442
R +L F S GR Y +Y+MSD Y+G DQ+Y+ +++DA
Sbjct: 134 RARVKLEFTAASEAGRKEYMIYLMSDYYLGRDQEYEFTVDVMDA 177
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +3
Query: 159 EYTLLLDMQRRGGNPNNVLCPRFPRGKNEGWF*RSAPWTME 281
E TL DM V PR+P+ K EGW+ + A +E
Sbjct: 100 EVTLERDMTNLPSEVGPVHAPRYPKPKEEGWWLKRARVKLE 140
>03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 37.1 bits (82), Expect = 0.009
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 194 RQSEQRAMS-EIPARQERGLVLTLGTVDDGELHALKRVPPRGTAQLT-FYTPSRTGRIIY 367
R+S RA S P ++ L LG + EL+ LKR+ T P+
Sbjct: 1897 RRSTSRAFSPRFPKAKQEAWWLVLGNIRSSELYGLKRINFMDRVVNTRMELPAMFDIQET 1956
Query: 368 TVYIMSDSYMGLDQQYDL 421
+ ++SDSY+G DQ+Y L
Sbjct: 1957 KLILVSDSYLGFDQEYSL 1974
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = -2
Query: 534 LMV*IIYFKQNHSINVFSIVSYTLS-TFSDGIASIISN 424
+M+ +IYF+ H IN+F ++ +T+ +FS G+ + N
Sbjct: 89 MMLPMIYFRNKHPINLFFLLLFTVCISFSVGLGCLSKN 126
>07_03_0625 + 20054380-20054434,20054819-20054853,20055387-20055941
Length = 214
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 245 GLVLTLGTVDDGELHALKRVPPRGTAQLTFYTPSRTGR 358
G T+G++ EL A+K PP TA T TP R R
Sbjct: 55 GTTGTIGSLMTRELEAIKAAPPHATAAAT--TPRRLRR 90
>06_01_0384 - 2758250-2758312,2758349-2758837,2760490-2761119
Length = 393
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 151 LIRNIPCYWICNVEAAIRTTC 213
L+RN PC ICN +R C
Sbjct: 123 LVRNAPCLSICNTPQYLRKRC 143
>04_03_0358 -
14856490-14856573,14856829-14856874,14857116-14857229,
14857366-14857401,14857822-14857946,14858052-14858117,
14858295-14858534,14858900-14859001,14859101-14859138,
14859219-14859321,14859402-14859524,14860666-14860742,
14860853-14860998,14861077-14861246
Length = 489
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 84 RRTIDRGRATLCP*LVGRISPCVSVE 7
R + RGR T+ P L GR PC S E
Sbjct: 311 RAPVTRGRMTMWPELGGRSLPCTSDE 336
>12_02_0506 - 19794383-19794670,19795066-19795140,19795337-19798704,
19799503-19799671,19799758-19799850
Length = 1330
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = -1
Query: 289 VQLSIVHGAERQNQPSFLPRGNLGHSTLFGLPPLRCI 179
V+L IV + + PSF +L H L LP L+CI
Sbjct: 899 VRLKIVGCPKWDDLPSFASLSSLKHVLLEDLPNLKCI 935
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 293 RRATLHRPRCRASEPALVLAARESRT*HVVRIAASTL 183
RR RP+ A PA LAAR RT R+ S L
Sbjct: 162 RRCLAGRPQATAGSPAARLAARRLRTSPPPRLRTSRL 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,839,685
Number of Sequences: 37544
Number of extensions: 318946
Number of successful extensions: 807
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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