Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30208
(550 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10588| Best HMM Match : Sec63 (HMM E-Value=0) 83 1e-16
SB_11026| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.067
SB_27274| Best HMM Match : Sec63 (HMM E-Value=1.9e-12) 30 1.1
SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0) 29 3.3
SB_58180| Best HMM Match : zf-C2H2 (HMM E-Value=1e-24) 28 5.8
SB_44288| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19) 28 5.8
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 27 7.6
>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
Length = 1047
Score = 83.0 bits (196), Expect = 1e-16
Identities = 44/73 (60%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Frame = +2
Query: 227 PARQERGLVLTLGTVDDGELHALKRVPP-RGT--AQLTFYTPSRTGRIIYTVYIMSDSYM 397
P Q G L LG D GEL ALKR+ P +GT A L+FYTP GR I TVY+MSDSY+
Sbjct: 961 PKVQTEGWWLVLGDTDTGELMALKRLGPVQGTTTATLSFYTPEEEGRKILTVYLMSDSYL 1020
Query: 398 GLDQQYDLQFEII 436
G+DQQYDL FE+I
Sbjct: 1021 GIDQQYDLFFEVI 1033
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Frame = +3
Query: 3 QIQQIHRAICDLPTTDIKLHVRGLWFDADH----EQDKRITQPPARDQWMPLHADQEYTL 170
+I+QIH + LP + + +RG W + D E+ R D W+ +HADQEY +
Sbjct: 878 EIEQIHSVLRRLPMLALSIKLRGAWEEGDGAKKAEKPVRTDLVGLHDNWVTVHADQEYAM 937
Query: 171 LLDMQRRG----GNPNNVLCPRFPRGKNEGWF 254
+ ++R G V P FP+ + EGW+
Sbjct: 938 KVSLKRLSASFRGADAKVHAPCFPKVQTEGWW 969
>SB_11026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 34.3 bits (75), Expect = 0.067
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 323 QLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEIIDAMPSENVDKVYDTIE 484
+L F P + G YTV + SDSY+ D + + + +A E +DT E
Sbjct: 28 ELKFQAPEKPGTYYYTVTLRSDSYLDCDVHQNFKIVVEEAKEFETKQWDFDTDE 81
>SB_27274| Best HMM Match : Sec63 (HMM E-Value=1.9e-12)
Length = 176
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 174 LDMQRRGGNPNNVLCPRFPRGKNEGWF 254
+D++R P V+ P FP+ + EGW+
Sbjct: 115 VDLEREDEQPGAVIAPFFPQKREEGWW 141
>SB_37165| Best HMM Match : SH3_1 (HMM E-Value=0)
Length = 1034
Score = 28.7 bits (61), Expect = 3.3
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -1
Query: 373 YSIYYTPSPRRSIECKLCRSSRRDPFQGVQ 284
YS+YY R+ + +LC+S+ + QG++
Sbjct: 736 YSLYYVGEDRKDKDLRLCKSTSVEDIQGLR 765
>SB_58180| Best HMM Match : zf-C2H2 (HMM E-Value=1e-24)
Length = 201
Score = 27.9 bits (59), Expect = 5.8
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Frame = -1
Query: 349 PRRSIECKLCRSSRRDPFQGVQLSIVHGAERQNQPSFLPRGNLGHSTL-------FGLPP 191
P R C C S +P + SIVH E+ + + R G +TL G P
Sbjct: 113 PNRPYHCGYCSESFSNPNELRNHSIVHANEKPFRCGYCSRSFSGATTLNNHIRTHTGEKP 172
Query: 190 LRCISNSRVYS*SACKGIH*SRAGGCV 110
C + + +S ++ H G CV
Sbjct: 173 FMCEACGKTFSQASQLSKHQKIPGDCV 199
>SB_44288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = +2
Query: 197 QSEQRAMSEIPARQERGLVLTLGTVDDGELHALKRVPPRGTAQLTFYTPSRTGRIIYTVY 376
+S + ++ + R + VLT+ + + R P T + P R G I+Y Y
Sbjct: 62 ESIKSSVVSMELRNDNNFVLTVANLSTPINLFIPRASPESDRNETLFVPKRNGSIVYHSY 121
>SB_27954| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 567
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 302 VPPRGTAQLTFYTPSRT-GRIIYTVYIMSD 388
+P +GT QLT + P+ T ++ VY +SD
Sbjct: 460 IPKKGTIQLTVFNPNETVVKVFVAVYDVSD 489
>SB_27467| Best HMM Match : ANF_receptor (HMM E-Value=6.9e-19)
Length = 922
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 546 FFFFLMV*IIYFKQNHSINVFSIVSYTLSTFSDGIASIISN 424
F+F L + I++ K N +NVF+ V+ S+F I I N
Sbjct: 581 FYFTLCISILFVKTNRLVNVFN-VNLDHSSFGSRICQGIQN 620
>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 730
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 367 IYYTPSPRRSIECKLCRSSRRDPFQG 290
+ +T PR + CRSSR PF G
Sbjct: 704 VLFTCRPRAATTLTTCRSSRNTPFSG 729
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,284,504
Number of Sequences: 59808
Number of extensions: 363261
Number of successful extensions: 944
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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