Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30208
(550 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ... 46 2e-05
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ... 38 0.004
Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical pr... 29 1.7
AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis p... 29 1.7
Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical pr... 27 6.7
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 27 8.9
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 27 8.9
AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical ... 27 8.9
>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
protein Y46G5A.4 protein.
Length = 2145
Score = 46.0 bits (104), Expect = 2e-05
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Frame = +2
Query: 233 RQERGLVLTLGTVDDGELHALKR--VPPRGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLD 406
R+E G L +G + L +KR + + + QL F P R G + ++ +SDSY+G D
Sbjct: 2061 RKEEGWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAP-RPGHHKFKLFFISDSYLGAD 2119
Query: 407 QQYDLQFEI 433
Q++D+ F++
Sbjct: 2120 QEFDVAFKV 2128
>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
protein Y54E2A.6 protein.
Length = 1798
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +2
Query: 311 RGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEI 433
R TA+L P+ G V I+SD Y+G+DQ+Y L+ ++
Sbjct: 1757 RSTAKLDIRAPATKGNHELAVLILSDCYLGIDQEYTLRLDV 1797
>Z75536-4|CAA99832.3| 2271|Caenorhabditis elegans Hypothetical protein
F18C12.2b protein.
Length = 2271
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 287 HALKRVPPRGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEIIDAMPSENVD- 463
HALK + R T +L S G + Y + ++ S G+ + EI+DA+ S +D
Sbjct: 2138 HALKCLMKRNTGELAQQMLS-CGMVPYLLQVLDSSMNGVSNGAAARAEIVDALKSAILDL 2196
Query: 464 KVYDTIEKTL 493
KV I + L
Sbjct: 2197 KVGQKIAEIL 2206
>Z75536-3|CAA99831.3| 2279|Caenorhabditis elegans Hypothetical protein
F18C12.2a protein.
Length = 2279
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 287 HALKRVPPRGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEIIDAMPSENVD- 463
HALK + R T +L S G + Y + ++ S G+ + EI+DA+ S +D
Sbjct: 2146 HALKCLMKRNTGELAQQMLS-CGMVPYLLQVLDSSMNGVSNGAAARAEIVDALKSAILDL 2204
Query: 464 KVYDTIEKTL 493
KV I + L
Sbjct: 2205 KVGQKIAEIL 2214
>AF372457-1|AAK54248.1| 2279|Caenorhabditis elegans endocytosis
protein RME-8 protein.
Length = 2279
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 287 HALKRVPPRGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEIIDAMPSENVD- 463
HALK + R T +L S G + Y + ++ S G+ + EI+DA+ S +D
Sbjct: 2146 HALKCLMKRNTGELAQQMLS-CGMVPYLLQVLDSSMNGVSNGAAARAEIVDALKSAILDL 2204
Query: 464 KVYDTIEKTL 493
KV I + L
Sbjct: 2205 KVGQKIAEIL 2214
>Z47811-2|CAA87786.2| 1307|Caenorhabditis elegans Hypothetical
protein K02C4.3 protein.
Length = 1307
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 492 NVFSIVSYTLSTFSDGIASIISNCKS 415
N+FS V YT S DG S+ SN ++
Sbjct: 450 NIFSSVCYTESVAEDGTVSVKSNVRN 475
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 91 MNKTNGSRNLPPGISGCLC 147
+N +N + + PG+SGC C
Sbjct: 1835 LNMSNSCQTVEPGVSGCCC 1853
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 27.1 bits (57), Expect = 8.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 91 MNKTNGSRNLPPGISGCLC 147
+N +N + + PG+SGC C
Sbjct: 1835 LNMSNSCQTVEPGVSGCCC 1853
>AF036705-9|AAO91724.1| 686|Caenorhabditis elegans Hypothetical
protein F37C4.2 protein.
Length = 686
Score = 27.1 bits (57), Expect = 8.9
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 319 RSSRRDPFQGVQ-LSIVHGAERQNQPSFLPRGNLGHSTLFGLPP-LRCISNSRVYS*SAC 146
+ S+R QG++ L+I+ P FLP G LG F L L C+ R + SAC
Sbjct: 7 KPSKRLDLQGIRALAILVVLGFHFYPEFLPNGYLGVDQFFVLSGFLMCMLLKRAENQSAC 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,717
Number of Sequences: 27780
Number of extensions: 264805
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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