Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30208
         (550 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.38 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.38 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.38 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.38 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.38 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   0.38 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.38 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   0.38 
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.5  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   8.2  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   8.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   8.2  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 332 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 332 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 332 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 332 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 332 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 332 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 400 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 221 EIPARQERGLVLTLGTVDDGELHALKRV-PPRGTAQLTFYTPSRTGR 358
           E+  +  + L+  +  +DD   H      PP G  +  F TP  TGR
Sbjct: 400 ELQEKSSKSLLANVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 431 IIDAMPSENVDKVYDTIEKTLIE*F 505
           ++ A+P++  DK Y T +K + E F
Sbjct: 18  LVQAVPNKVADKTYVTRQKNIYELF 42


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 431 IIDAMPSENVDKVYDTIEKTLIE*F 505
           ++ A+P++  DK Y T +K + E F
Sbjct: 18  LVQAVPNKVADKTYVTRQKNIYELF 42


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 85  ASNHRPRTCNFMSVVGRSHIALC 17
           A  HR  TC+ +S  G+ + + C
Sbjct: 38  ADRHRRVTCDLLSFKGQVNDSAC 60


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 85  ASNHRPRTCNFMSVVGRSHIALC 17
           A  HR  TC+ +S  G+ + + C
Sbjct: 38  ADRHRRVTCDLLSFKGQVNDSAC 60


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 85 ASNHRPRTCNFMSVVGRSHIALC 17
          A  HR  TC+ +S  G+ + + C
Sbjct: 13 ADRHRRVTCDLLSFKGQVNDSAC 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,374
Number of Sequences: 438
Number of extensions: 3627
Number of successful extensions: 14
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)