Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30208
         (550 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli...    58   5e-09
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    51   6e-07
At3g28870.1 68416.m03604 hypothetical protein                          40   0.001
At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to autop...    29   2.7  
At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to autop...    29   2.7  
At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   6.2  
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains...    27   6.2  
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar...    27   8.3  
At3g04050.1 68416.m00427 pyruvate kinase, putative similar to py...    27   8.3  
At2g29920.1 68415.m03634 expressed protein                             27   8.3  

>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
            putative 
          Length = 2172

 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
 Frame = +2

Query: 227  PARQERGLVLTLGTVDDGELHALKRVPPRGTAQ--LTFYTPSRTGRIIYTVYIMSDSYMG 400
            P  +E G  L +G     +L A+KR+  +  AQ  L F  P+ TG   YT+Y M DSY+G
Sbjct: 2091 PKTKEEGWWLVVGEAKTNQLMAIKRISLQRKAQVKLEFAVPTETGEKSYTLYFMCDSYLG 2150

Query: 401  LDQQYDLQFEIIDAMPSENVDK 466
             DQ+Y    ++ D+  ++++++
Sbjct: 2151 CDQEYSFTVDVKDSDAADHMEE 2172


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein helicase,
            putative similar to SP|O75643 U5 small nuclear
            ribonucleoprotein 200 kDa helicase {Homo sapiens};
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2171

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +2

Query: 227  PARQERGLVLTLGTVDDGELHALKRVP--PRGTAQLTFYTPSRTGRIIYTVYIMSDSYMG 400
            P  +E G  L +G     +L A+KRV    +   +L F  PS  G   YT+Y M DSY+G
Sbjct: 2090 PKTKEEGWWLVVGDTKTNQLLAIKRVSLQRKVKVKLDFTAPSEPGEKSYTLYFMCDSYLG 2149

Query: 401  LDQQYDLQFEI 433
             DQ+Y    ++
Sbjct: 2150 CDQEYSFSVDV 2160


>At3g28870.1 68416.m03604 hypothetical protein
          Length = 355

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 311 RGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFE 430
           +   +L F  PS  G   YT+Y M DSY+G DQ+Y    +
Sbjct: 304 KAKVKLDFTVPSEPGEKSYTLYFMCDSYLGCDQEYSFSVD 343


>At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 471

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 165 YIPDQHAKASTDPGREVA*SVCLVHDQRRTIDRGRATLCP*LVGRISP 22
           ++P + + +ST   R+++    LV D   + ++   TLC  +V   SP
Sbjct: 8   FVPSKCSSSSTSEKRDISSPTSLVSDSASSDNKSNLTLCSDVVASSSP 55


>At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to
           autophagy 4b [Arabidopsis thaliana]
           gi|19912145|dbj|BAB88384
          Length = 477

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 165 YIPDQHAKASTDPGREVA*SVCLVHDQRRTIDRGRATLCP*LVGRISP 22
           ++P + + +ST   R+++    LV D   + ++   TLC  +V   SP
Sbjct: 8   FVPSKCSSSSTSEKRDISSPTSLVSDSASSDNKSNLTLCSDVVASSSP 55


>At5g24530.1 68418.m02897 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to flavanone 3-hydroxylase
           [Persea americana][GI:727410]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 341

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/71 (22%), Positives = 31/71 (43%)
 Frame = +2

Query: 272 DDGELHALKRVPPRGTAQLTFYTPSRTGRIIYTVYIMSDSYMGLDQQYDLQFEIIDAMPS 451
           + G+  A+   PP    +LT+  P+ T     T+ +   +  GL    D Q+  ++  P 
Sbjct: 187 EQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQDTTVCGLQILIDGQWFAVNPHPD 246

Query: 452 ENVDKVYDTIE 484
             V  + D ++
Sbjct: 247 AFVINIGDQLQ 257


>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
           Pfam profile PF00004: ATPase, AAA family
          Length = 1122

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 265 AERQNQPSFLPRGNLGHSTLFGLPPLRCISNSRVYS*SACKGI 137
           ++ Q +P  LPR ++ H+   G+PPL C+    +   S   G+
Sbjct: 466 SQLQLEPETLPR-SVNHTLKKGMPPLHCLQQKILLQSSWISGL 507


>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
            ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
            contains Pfam profiles PF00270: DEAD/DEAH box helicase,
            PF00271: Helicase conserved C-terminal domain, PF02889:
            Sec63 domain
          Length = 2146

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 198  NPNNVLCPRFPRGKNEGWF 254
            N +  L PRFP+ K+E W+
Sbjct: 2064 NSSRALAPRFPKVKDEAWW 2082


>At3g04050.1 68416.m00427 pyruvate kinase, putative similar to
           pyruvate kinase, cytosolic isozyme [Nicotiana tabacum]
           SWISS-PROT:Q42954
          Length = 510

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -2

Query: 480 IVSYTLSTFSDGIASIISNCKSYCWSKPM*LSLIIYTVYIIRPVREGV*NVSCAVP 313
           IVS  LS      AS +S  +S C +  + L+   YTV ++   R  V  +S  VP
Sbjct: 367 IVSLPLSPIESLAASAVSTARSLCAAAIVVLTKGGYTVELVAKYRPSVPILSVIVP 422


>At2g29920.1 68415.m03634 expressed protein
          Length = 187

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 33  DLPTTDIKLHVRGLWFDADHEQDKRITQPPARDQWMPLHADQEYTLLL 176
           +L  TD  L +  L    DH+ +  +T      + +PLH D +  LLL
Sbjct: 98  ELLLTDSDLDLELLLLHQDHDLELLLTDSDFDLELLPLHQDHDLELLL 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,666,397
Number of Sequences: 28952
Number of extensions: 240365
Number of successful extensions: 574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)