Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30207
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145... 136 1e-32
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 135 2e-32
07_03_1639 + 28305801-28305958,28306240-28306249 38 0.007
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 33 0.15
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 33 0.15
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848... 32 0.34
04_03_0266 + 13648287-13649099,13649186-13649524 28 5.5
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980... 28 7.3
09_06_0281 + 22014394-22015534,22016041-22017056 28 7.3
04_04_1503 + 34031540-34031562,34031682-34032212,34032417-340325... 28 7.3
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 28 7.3
02_02_0421 - 10042184-10042197,10042442-10042822,10044158-100442... 28 7.3
12_01_0476 + 3738526-3738567,3738695-3738739,3739240-3739601,373... 27 9.7
10_08_0781 + 20509033-20509714,20510048-20510191,20510604-205107... 27 9.7
02_05_0521 - 29726985-29727605 27 9.7
02_05_0067 + 25557975-25558553 27 9.7
02_03_0300 + 17454622-17455402,17455535-17456977,17457015-174573... 27 9.7
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259... 27 9.7
>03_02_0934 -
12513810-12513834,12513918-12513970,12514212-12514525,
12514608-12514730,12515710-12515821
Length = 208
Score = 136 bits (330), Expect = 1e-32
Identities = 60/84 (71%), Positives = 73/84 (86%)
Frame = +3
Query: 3 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
M SLKLQKRLAASV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 183 ARVRKNTEARRKGRHCGFGKRRGT 254
+R R+ EA++KGRH G+GKRRGT
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGT 84
Score = 98.3 bits (234), Expect = 5e-21
Identities = 50/90 (55%), Positives = 58/90 (64%)
Frame = +2
Query: 260 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 439
AR+P K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 440 AEKARTKMLSDQAEARRNKVKEAASAARNV 529
AEKAR K LSDQ EA+R K K AS R +
Sbjct: 147 AEKAREKTLSDQFEAKRAKSK--ASRERKI 174
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 135 bits (327), Expect = 2e-32
Identities = 59/84 (70%), Positives = 73/84 (86%)
Frame = +3
Query: 3 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
M SLKLQKRLA+SV++CGK KVWLDPNE+NEI+ NSRQNIRK++KDG +IKKP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSR 60
Query: 183 ARVRKNTEARRKGRHCGFGKRRGT 254
+R R+ EA++KGRH G+GKRRGT
Sbjct: 61 SRARRAHEAKQKGRHSGYGKRRGT 84
Score = 99.5 bits (237), Expect = 2e-21
Identities = 55/114 (48%), Positives = 66/114 (57%)
Frame = +2
Query: 260 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 439
AR+P K LW AKKID+H+YH +YMK KGN+FKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNMFKNKRVLMESIHKSK 146
Query: 440 AEKARTKMLSDQAEARRNKVKEAASAARNVLPPRRRNCCRPSLEKTKPRLPLRS 601
AEKAR K LSDQ EA+R K K AS R + R P E P +P ++
Sbjct: 147 AEKAREKTLSDQFEAKRAKSK--ASRERKIARRDERLAQGPR-EPAAPAVPAQT 197
>07_03_1639 + 28305801-28305958,28306240-28306249
Length = 55
Score = 37.9 bits (84), Expect = 0.007
Identities = 23/52 (44%), Positives = 29/52 (55%)
Frame = +2
Query: 374 MKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAASAARNV 529
MK KGN+ NKR + +AEKAR + LSDQ EA+ K AS R +
Sbjct: 1 MKVKGNMLNNKRGPYGEYPQVQAEKARKRTLSDQFEAK--LAKSMASQERKI 50
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 18 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 188
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 748 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 805
Query: 189 VRKNTEARRKGRHCGFG 239
+ T RKGR GFG
Sbjct: 806 DEETTSISRKGRAQGFG 822
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 33.5 bits (73), Expect = 0.15
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = +3
Query: 18 LQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMI---KDGLVIKKPVAVHSRAR 188
LQ+ L + K W D E+N + + R + KM+ D LV+ +A H
Sbjct: 699 LQQFLVTIFDKLDKGNPWDDDFELNTLLQESIRNSADKMLLTAPDSLVVS--LAKHDTRN 756
Query: 189 VRKNTEARRKGRHCGFG 239
+ T RKGR GFG
Sbjct: 757 DEETTSISRKGRAQGFG 773
>07_03_0435 +
18182657-18183509,18184477-18184574,18184663-18184833,
18185524-18185624,18185702-18185837,18186007-18186057,
18186202-18186489,18186610-18186844,18186924-18187204,
18187336-18187557
Length = 811
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 431 RKKAEKARTKMLSDQAEARRNKVKEAASA 517
RKKAE+A K +++AEARR K +E A
Sbjct: 208 RKKAEEAEAKRKAEEAEARRKKEEEERDA 236
>04_03_0266 + 13648287-13649099,13649186-13649524
Length = 383
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 57 KKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNT 203
K+K+ L +E ++ T R+ RK+ K + KK + H ++RK++
Sbjct: 320 KRKLVLSDDEGDDAEKTRDRETTRKLPKQA-IPKKKTSSHPMPKIRKSS 367
>10_06_0028 -
9802362-9802475,9802919-9803090,9803167-9803208,
9803344-9804011,9804098-9804418,9804495-9804833,
9804856-9805109,9805300-9805510
Length = 706
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 72 LDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVH 176
LDP +NE N R NI IKD L ++ +H
Sbjct: 628 LDPAVVNETTLKNDRANIVDYIKDCLFARQRQGLH 662
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 173 YCYRFLDDETILDHLTDVLSGVGVCDLID 87
Y YR DDE+++ H T +L+ + D++D
Sbjct: 657 YSYRSPDDESLVTHFTALLTQGNLGDILD 685
>04_04_1503 +
34031540-34031562,34031682-34032212,34032417-34032571,
34032929-34033020,34033916-34034419
Length = 434
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 434 KKAEKAR--TKMLSDQAEARRNKVKEAASAARNVL-PPRRRNCCRPSLEKTKPRLPLRSK 604
+K K R T + D+ +ARR+K + + PPRR + + PR+PL +
Sbjct: 295 RKGNKQRMSTALDCDRTDARRSKTRGRNDRWMTIRGPPRRATRRQKNQLLNSPRVPLMGR 354
Query: 605 H 607
H
Sbjct: 355 H 355
>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 27.9 bits (59), Expect = 7.3
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +2
Query: 335 AKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAAS 514
AK + LY + K + ++ R + IHR AEK MLS + R + +K
Sbjct: 847 AKPKWKPLYTIFHKKNPRSRREDLRTHVANIHRMIAEKIWPGMLSRKPVLRLHFLKFIDE 906
Query: 515 AARNVLPP 538
R +LPP
Sbjct: 907 TCRQILPP 914
>02_02_0421 -
10042184-10042197,10042442-10042822,10044158-10044261,
10044634-10044734,10044806-10045147,10045981-10046158,
10047696-10047776,10049190-10049449
Length = 486
Score = 27.9 bits (59), Expect = 7.3
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +3
Query: 3 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
+ SL L R+ C +V+ D + N +NIRK + ++++ P+A +
Sbjct: 103 IESLSLMIRMLL-YCECFAARVYCDGCHCSPCGNKIENENIRKEAIETILLRNPLAFQPK 161
Query: 183 ARVRKNTEARRK 218
NT RK
Sbjct: 162 IENSPNTVTVRK 173
>12_01_0476 +
3738526-3738567,3738695-3738739,3739240-3739601,
3739691-3740057,3740490-3740555,3741630-3741743
Length = 331
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 27 RLAASVMRCGKKKVWLDPNEINEIA--NTNSRQNIRKMIKDGLV 152
R A RC + LDPNEI ++ SR+ + +++ G++
Sbjct: 236 RFALHCRRCERDATPLDPNEIKHVSPYGITSREQVLEVVARGIL 279
>10_08_0781 +
20509033-20509714,20510048-20510191,20510604-20510719,
20511356-20511520,20511822-20512043,20512613-20512735
Length = 483
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +3
Query: 69 WLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGK 242
++D N+ + + +SR ++ ++ GL +K PV + VR E GR G G+
Sbjct: 29 YVDGNDTEDCYSGSSRASLAGALRQGLNLKSPVLGYKTPNVR---ELYTLGRELGQGQ 83
>02_05_0521 - 29726985-29727605
Length = 206
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 114 RQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGTPMRVCHRRNYGY 290
R +R M++ GL + +AV A R + EARR+ R +RR M N+ +
Sbjct: 54 RAAVRGMVRGGLAPRARLAVLRAAAFRDSREARRRIRRDRRRRRRRGMMVAALSPNHAF 112
>02_05_0067 + 25557975-25558553
Length = 192
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 410 HACS*THYPSPSCRVSGIDACQSSW 336
H C H P CR + +DA Q+ W
Sbjct: 148 HGCDKEHAYQPPCRPNVVDASQAVW 172
>02_03_0300 +
17454622-17455402,17455535-17456977,17457015-17457317,
17458429-17458519,17458623-17459757,17459998-17460077,
17460449-17460533,17460614-17460705,17461079-17461147,
17461227-17461263,17461351-17461433,17461695-17461840,
17461868-17462138,17462245-17462281,17462428-17462721
Length = 1648
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 57 KKKVWLDPN-EINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRK 218
K KVW P E+ + +R + +K + +KP A R RVRK TEA K
Sbjct: 681 KPKVWSRPRKEVEPVGKPKARGHPKKQAEPD---EKPKA---RGRVRKTTEANGK 729
>02_01_0360 -
2594534-2594601,2594778-2594829,2594915-2595029,
2595124-2595212,2595326-2595391,2595468-2595657,
2595811-2596037,2596111-2596185,2596283-2596354,
2596507-2596577,2596848-2597036,2597186-2597298,
2598063-2598268
Length = 510
Score = 27.5 bits (58), Expect = 9.7
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = -1
Query: 474 WSLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLKTLC 295
W++S+ L+ AFF+W S N A S++ L I + Y LKT
Sbjct: 116 WAVSVSCLSMLAFFVWHLRQSPS---NGNSIA---SKYGLLLIILYPLAYLFHLLLKTDG 169
Query: 294 LCTHSSFCGIRALV-YLFSYQSHSDDPFY---VLLCFCG 190
C F I + Y S+ + PF+ VL +CG
Sbjct: 170 DCICLDFRAIHTIASYPTSFHAGMGRPFWSQVVLFLYCG 208
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,801,971
Number of Sequences: 37544
Number of extensions: 348438
Number of successful extensions: 1086
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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