Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30207
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.) 141 4e-34
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 32 0.46
SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7) 29 2.4
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34) 28 5.7
SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2) 28 7.5
SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33) 28 7.5
SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_13623| Best HMM Match : rve (HMM E-Value=0.00044) 28 7.5
SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86) 27 9.9
SB_17310| Best HMM Match : Filament (HMM E-Value=0.31) 27 9.9
>SB_7038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 141 bits (342), Expect = 4e-34
Identities = 63/84 (75%), Positives = 74/84 (88%)
Frame = +3
Query: 3 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
+ +L+LQKRLAAS+++CGKKK+WLDPNE NEIAN NSRQN+RK+IKDGL+IKKP VHSR
Sbjct: 29 VGTLRLQKRLAASLLKCGKKKIWLDPNECNEIANANSRQNVRKLIKDGLIIKKPEIVHSR 88
Query: 183 ARVRKNTEARRKGRHCGFGKRRGT 254
ARVRK EAR KGRH G GKR+GT
Sbjct: 89 ARVRKADEARSKGRHSGHGKRKGT 112
Score = 124 bits (298), Expect = 8e-29
Identities = 60/102 (58%), Positives = 71/102 (69%)
Frame = +2
Query: 245 KRYTNARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEY 424
K NARMPQK +W AKKID H+YHSLYMK+KGNVFKNKRVLMEY
Sbjct: 110 KGTANARMPQKTIWIRRMRVLRRLLRKYREAKKIDNHMYHSLYMKSKGNVFKNKRVLMEY 169
Query: 425 IHRKKAEKARTKMLSDQAEARRNKVKEAASAARNVLPPRRRN 550
IH+KKAEKAR+K+LSDQAEARRNK K A + + +R++
Sbjct: 170 IHKKKAEKARSKLLSDQAEARRNKNKAAKQRRDDRMEQKRKD 211
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 485 RRNKVKEAASAARNV-LPPRRRNCCRPSLEKTKPRLPLRSK 604
R N V AS +R PP +N +P ++KTKP PL ++
Sbjct: 182 RNNIVLSTASWSRKTSAPPSEKNAFQPPMKKTKPSSPLLTR 222
>SB_805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 29.9 bits (64), Expect = 1.9
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +2
Query: 446 KARTKMLSDQAEARRNKVKEAASAARNVLPPRR---RNCCRPSLEKTKPRLPLRSKHYVV 616
KA L D+ EA RN++++ A+RN L R RN R E ++ R LR +H
Sbjct: 949 KALCNRLRDRHEASRNRLRDRHEASRNRLRDRHEASRNRLRNRHEASRNR--LRDRHEAS 1006
Query: 617 NN 622
N
Sbjct: 1007 RN 1008
>SB_49306| Best HMM Match : Herpes_US9 (HMM E-Value=5.7)
Length = 381
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -1
Query: 309 LKTLCLCTHSSFCGIRALVYLFSYQSHSDDPFYVL---LCFCGHE--RGSVLLQ 163
L+ LC C HS+ G L++ Y HS +L LC+ GH G++LL+
Sbjct: 91 LRALCYCGHSAIVG-TLLLWALCYYGHSAITGTLLLRALCYYGHSAITGTLLLR 143
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = -1
Query: 471 SLSIFVLAFSAFFLWMYSMSTRLFLNTLPFAFM*SEWYRCLSIFLAVLYFRSNFLKTLCL 292
S+S+ L AF ++ +S R F F S R + + ++ S L+ LCL
Sbjct: 1876 SVSLRYLYLCAFCIFALYLSLRFLYLCAIFVFALSVSLRYICLCAFCIFALSVSLRYLCL 1935
Query: 291 CTHSSFCGIRALVYLF 244
C F +L YL+
Sbjct: 1936 CAICIFAVFVSLRYLY 1951
>SB_28528| Best HMM Match : TUDOR (HMM E-Value=0.34)
Length = 736
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 395 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAASAARNVLP 535
F+ + MEY + EKA K+ Q++A R K+ + A ++P
Sbjct: 80 FQKAKEAMEYARKSATEKAAEKIQDIQSQAARIKLTVSIQAPFIIIP 126
>SB_52479| Best HMM Match : Laminin_B (HMM E-Value=2.2)
Length = 465
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 126 RKMIKDGLVIKKPVAVHSR-ARVRKNTEARRKG-RHCGFGKRRGTPMRVCHRRNYGY 290
RK+IK+ + KKP H + A K E G + F +++G ++ +RN Y
Sbjct: 224 RKLIKESEMSKKPTVGHQKEAGYHKAPEREFLGEKRLLFERKKGAEKQLLQKRNENY 280
>SB_48888| Best HMM Match : rve (HMM E-Value=6.4e-33)
Length = 566
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 485 RRNKVKEA--ASAARNVLPPRRRNCCRPSLEK 574
R NK +E S AR V P R CRP+L K
Sbjct: 528 RNNKDRECDVRSTARQVPPTTRSTSCRPALRK 559
>SB_40626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/74 (20%), Positives = 30/74 (40%)
Frame = +2
Query: 341 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAASAA 520
+ R Y +LY KGN F + L++ E+ R K + ++++ +
Sbjct: 70 EFQRKRYGNLYQLLKGNTFTDAEDLVKLWDAAHYEEERAKKRKPLTPLAKFRIRQRFTPP 129
Query: 521 RNVLPPRRRNCCRP 562
+ + P R+ P
Sbjct: 130 KTICPKGRQKSTLP 143
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 485 RRNKVKEA--ASAARNVLPPRRRNCCRPSLEK 574
R NK +E S AR V P R CRP+L K
Sbjct: 1658 RNNKDRECDVRSTARQVPPTTRSTSCRPALRK 1689
>SB_13623| Best HMM Match : rve (HMM E-Value=0.00044)
Length = 203
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +2
Query: 485 RRNKVKEA--ASAARNVLPPRRRNCCRPSLEK 574
R NK +E S AR V P R CRP+L K
Sbjct: 165 RNNKDRECDVRSTARQVPPTTRSTSCRPALRK 196
>SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 609
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 446 KARTKMLSDQAEARRNKVKEAASAARNVLPPRRRNCCRPSLEKTKPRLPLRSKHYV 613
KAR + S +RN KE + ++ R NC LE+ K L + H++
Sbjct: 391 KARNSIRSADDVLKRNDAKEIIDSRSKLVTELRENCLEGRLEEGK-LLMVEETHHI 445
>SB_22519| Best HMM Match : Pterin_4a (HMM E-Value=0.86)
Length = 1578
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = -2
Query: 332 FCTSGAIFLKPFVFVPIV--PSVAYAHWCTSSLTKATVTTLSTCFCVFADTSAGVYCYRF 159
+CT I+++P P V ++ + + TV+T T F T+ G+Y
Sbjct: 236 YCTKSVIYVRPDEAATFGWDPHVVFSDNGIAYPRQVTVSTPDTAH--FVKTTVGLYKIEN 293
Query: 158 LDDETILDHLTDVL 117
++ I+ +TDVL
Sbjct: 294 AKEQVIVPEVTDVL 307
>SB_17310| Best HMM Match : Filament (HMM E-Value=0.31)
Length = 458
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 425 IHRKKAEKARTKMLSDQAEARRNKVKEAASA 517
+HRK E ART+ + A +R K +E A+A
Sbjct: 101 LHRKSLEDARTEHAQEIAHLKRLKDEEVAAA 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,069,995
Number of Sequences: 59808
Number of extensions: 394763
Number of successful extensions: 1285
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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