Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30207
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   132   2e-31
AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical ...    38   0.006
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    31   0.53 
U23174-4|AAC46710.2|  294|Caenorhabditis elegans Serpentine rece...    30   1.6  
U23174-3|AAX22284.1|  381|Caenorhabditis elegans Serpentine rece...    30   1.6  
AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical ...    29   2.1  
AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical...    29   2.8  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical ...    28   4.9  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered cu...    27   8.6  
AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical ...    27   8.6  
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    27   8.6  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  132 bits (319), Expect = 2e-31
 Identities = 56/84 (66%), Positives = 74/84 (88%)
 Frame = +3

Query: 3   MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
           MS+L+LQKRLA++V++CGK +VWLDPNE++EI+  NSRQ+IR+++ DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 183 ARVRKNTEARRKGRHCGFGKRRGT 254
            R R+  EARRKGRH G+GKRRGT
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGT 84



 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 45/84 (53%), Positives = 57/84 (67%)
 Frame = +2

Query: 257 NARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRK 436
           NARMP+K LW                AKK+D+HLYH LY++AKGN FKNK+ L+EYI +K
Sbjct: 86  NARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKK 145

Query: 437 KAEKARTKMLSDQAEARRNKVKEA 508
           K E  R K L+DQA+ARR+K KE+
Sbjct: 146 KTENKRAKQLADQAQARRDKNKES 169


>AF098999-4|AAC68729.1|  659|Caenorhabditis elegans Hypothetical
           protein W04C9.6 protein.
          Length = 659

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = -2

Query: 314 IFLKPFVFVPIVPSVAYAHWCTSSLTKATVTT-LSTCFCVFADTSAGVYCYRFLDDETIL 138
           IF++PF    IV    +  W    L  A +   ++T FC+FAD S   +  R  DD+  +
Sbjct: 402 IFIEPFFVNMIVTDDTFTDWRNCFLAHAGLLLFVNTIFCLFADASPAKWT-RLQDDDVAI 460

Query: 137 DHLTDVLSGVGVCDLIDFI 81
           +   +  SG  + D+I F+
Sbjct: 461 EEEKEEYSG-SIEDIIKFL 478


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 99   ANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 233
            ++T+S +N+R ++ D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>U23174-4|AAC46710.2|  294|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 14, isoform b
           protein.
          Length = 294

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = -2

Query: 389 YPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVPIVPSVAYAHWCTSSLTKATVTTLST 210
           Y +   RV G+      W  C   A+F      V +     Y H+CT+ ++    +  S 
Sbjct: 158 YEANGSRVVGLVLVTGQWFVCIIVAVFS-----VLLRSDPGYVHYCTAYVSHPRTSVFSL 212

Query: 209 CFCVFADTSAGVY 171
           CF    + +  VY
Sbjct: 213 CFMSALEVATLVY 225


>U23174-3|AAX22284.1|  381|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 14, isoform a
           protein.
          Length = 381

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 18/73 (24%), Positives = 29/73 (39%)
 Frame = -2

Query: 389 YPSPSCRVSGIDACQSSWQFCTSGAIFLKPFVFVPIVPSVAYAHWCTSSLTKATVTTLST 210
           Y +   RV G+      W  C   A+F      V +     Y H+CT+ ++    +  S 
Sbjct: 158 YEANGSRVVGLVLVTGQWFVCIIVAVFS-----VLLRSDPGYVHYCTAYVSHPRTSVFSL 212

Query: 209 CFCVFADTSAGVY 171
           CF    + +  VY
Sbjct: 213 CFMSALEVATLVY 225


>AF039720-5|AAB96696.1|  408|Caenorhabditis elegans Hypothetical
           protein F33D11.2 protein.
          Length = 408

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 434 KKAEKARTKMLSDQAEARRNKVKEAASAARNVLPPRRRNCCRPSLEK 574
           KKAEK +++++  QAEA++N  K   +  +     +     R  L+K
Sbjct: 132 KKAEKVKSELVVPQAEAQKNTPKSVVARKKETKEAKDAKEAREELKK 178


>AC084153-15|AAK84589.2|  152|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.15 protein.
          Length = 152

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -2

Query: 278 PSVAYAHWCTSSLTKATVTTLSTCFCVFADTSAGVYCYRFL 156
           P + Y   C +S+T  TV ++ TC+ +       V+C+  L
Sbjct: 83  PYLEYCPRCQTSVTTRTVHSIGTCWWIILFIGVFVFCWPIL 123


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 111 SRQNIRKMIK-DGLVIKKPVAVHSRARVRKNTEARRKGR 224
           S +N+RKMIK  G V+ +   ++  A +R   EAR   R
Sbjct: 170 SAENVRKMIKIGGSVVVRDYGINDHAMIRFGREARISDR 208


>AF022967-1|AAY86215.1|  370|Caenorhabditis elegans Hypothetical
           protein C13A2.12 protein.
          Length = 370

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 362 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAASAARN 526
           H     A+ N  K + V++   H+KKA      +    A ARRN ++  A AA N
Sbjct: 312 HKKKALARLNALKRQHVVVA--HKKKALARLNALKRKHAVARRNAIQRQARAAAN 364


>AF036692-8|AAB88329.1|  162|Caenorhabditis elegans Hypothetical
           protein C44B12.6 protein.
          Length = 162

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 521 RNVLPPRRRNCCRPSLEKTKPRLP 592
           R++L P+ R+C  PS++K+   LP
Sbjct: 51  RHMLTPKSRDCSEPSIDKSSEVLP 74


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -2

Query: 323 SGAIFLKPFVFVPIVPSVAYAHWCTSSLTKATVTTLSTCFCVFADTSAGVYCYRF 159
           +G +F +   +  I+P V+       + T A +TT      V  D+S   YCY F
Sbjct: 312 NGYVFRRILPYQCILPPVSTTTVPAPTTTAAPLTTCQNGGQVLKDSSGSPYCYCF 366


>AF003386-13|AAB54250.1|  311|Caenorhabditis elegans Blistered
           cuticle protein 2 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -1

Query: 300 LCLCTHSSFCGIRALVYLFSYQSHSDDPFYVLLCFCGHERGSVLLQ 163
           +C+ T S+   I A+  L++Y  H     +  + FC H    + +Q
Sbjct: 21  ICISTVSTLTCIIAIPLLYNYMQHVQTNLHSEIDFCRHRTVGLFIQ 66


>AC024830-6|AAF59601.3|  603|Caenorhabditis elegans Hypothetical
           protein Y55F3BR.8a protein.
          Length = 603

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 351 LSIFLAVLYFRSNFLK 304
           L++ LA++YFRSNF K
Sbjct: 8   LAVILAIIYFRSNFSK 23


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 371 RVSGI--DACQSSWQFCTSGAIFLKPFVFVPIVPSVAYAHWCTSSLTKAT 228
           R+ GI   ACQS+ +  T   +  K F F+  VP+  + +W T+S   AT
Sbjct: 205 RIDGIRTKACQSTPR--TPYCMSPKGFTFLSSVPTFEHYNWVTNSSAMAT 252


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,900,149
Number of Sequences: 27780
Number of extensions: 290026
Number of successful extensions: 993
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)