Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30207
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    26   0.36 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    26   0.36 
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    24   1.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.3  
S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.               22   5.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.7  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 530 LPPRRRNCCRPSLEKTKPRLPLRSK 604
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 530 LPPRRRNCCRPSLEKTKPRLPLRSK 604
           + PR++NCCR  L K     P RSK
Sbjct: 393 MQPRKKNCCRSWLSK----FPTRSK 413


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = +2

Query: 419 EYIHRKKAEK----ARTKMLSDQAEA--RRNKVKEAASA--ARNVLPPRRRNCCRPSLEK 574
           EYI R++ E     A T  + D      +R K K++  +    N L   RR   R  LEK
Sbjct: 11  EYIERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEK 70

Query: 575 TKPRLPL 595
            K  +PL
Sbjct: 71  LKVLVPL 77


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 2   DEFPQAAEEACSLCYAMW*KEG 67
           DEF +  +  CSLC   + ++G
Sbjct: 264 DEFDEFGDSKCSLCQRRFEEQG 285


>S78458-1|AAB34402.1|   46|Apis mellifera apamin protein.
          Length = 46

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 357 RCLSIFLAVLYFRSNFLKTLCLC 289
           RC+ +FL+V+   S F+  +  C
Sbjct: 6   RCIYLFLSVILITSYFVTPVMPC 28


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 12/65 (18%), Positives = 30/65 (46%)
 Frame = +2

Query: 395 FKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAASAARNVLPPRRRNCCRPSLEK 574
           F + + ++E+++R + + ++ ++ S    A + K+K       +   P   +   P  E 
Sbjct: 83  FNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREP 142

Query: 575 TKPRL 589
             PR+
Sbjct: 143 GTPRI 147


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,995
Number of Sequences: 438
Number of extensions: 3460
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)