Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30207
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) simi... 130 6e-31
At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) simi... 128 2e-30
At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) simi... 128 4e-30
At4g16030.1 68417.m02432 60S ribosomal protein L19, putative sim... 46 3e-05
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 29 3.5
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 28 4.6
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 28 4.6
At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol p... 28 6.1
At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative simil... 28 6.1
At2g25320.1 68415.m03029 meprin and TRAF homology domain-contain... 28 6.1
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 28 6.1
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 27 8.1
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 27 8.1
At5g24430.1 68418.m02879 calcium-dependent protein kinase, putat... 27 8.1
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 27 8.1
At2g32000.1 68415.m03910 DNA topoisomerase family protein simila... 27 8.1
At1g64690.1 68414.m07333 expressed protein 27 8.1
>At3g16780.1 68416.m02142 60S ribosomal protein L19 (RPL19B) similar
to ribosomal protein L19 GB:CAA45090 from [Homo sapiens]
Length = 209
Score = 130 bits (315), Expect = 6e-31
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +3
Query: 3 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
M SLK+QKRLAASVM+CGK KVWLDPNE +I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 183 ARVRKNTEARRKGRHCGFGKRRGT 254
+R R EA+RKGRH G+GKR+GT
Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGT 84
Score = 97.1 bits (231), Expect = 9e-21
Identities = 49/88 (55%), Positives = 57/88 (64%)
Frame = +2
Query: 260 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 439
AR+P K LW +KKIDRH+YH +YMK KGNVFKNKRVLME IH+ K
Sbjct: 87 ARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMK 146
Query: 440 AEKARTKMLSDQAEARRNKVKEAASAAR 523
AEKAR K L+DQ EA+R +K AS R
Sbjct: 147 AEKAREKTLADQFEAKR--IKNKASRER 172
>At1g02780.1 68414.m00233 60S ribosomal protein L19 (RPL19A) similar
to ribosomal protein L19 GI:36127 from [Homo sapiens]
Length = 214
Score = 128 bits (310), Expect = 2e-30
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +3
Query: 3 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
M SLKLQKRLAASVM+CGK KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 183 ARVRKNTEARRKGRHCGFGKRRGT 254
+R RK A+ KGRH G+GKR+GT
Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGT 84
Score = 96.3 bits (229), Expect = 2e-20
Identities = 46/81 (56%), Positives = 53/81 (65%)
Frame = +2
Query: 260 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 439
AR+P K LW KKID+H+YH +YM+ KGNVFKNKRVLME IH+ K
Sbjct: 87 ARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSK 146
Query: 440 AEKARTKMLSDQAEARRNKVK 502
AEKAR K LSDQ EA+R K K
Sbjct: 147 AEKAREKTLSDQFEAKRAKNK 167
>At4g02230.1 68417.m00302 60S ribosomal protein L19 (RPL19C) similar
to L19 from several species
Length = 208
Score = 128 bits (308), Expect = 4e-30
Identities = 55/84 (65%), Positives = 72/84 (85%)
Frame = +3
Query: 3 MSSLKLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 182
M SLKLQKRLA+SV++CGK+KVWLDPNE ++I+ NSRQNIRK++KDG +I+KP +HSR
Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 183 ARVRKNTEARRKGRHCGFGKRRGT 254
+R R+ A+RKGRH G+GKR+GT
Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGT 84
Score = 98.7 bits (235), Expect = 3e-21
Identities = 48/81 (59%), Positives = 53/81 (65%)
Frame = +2
Query: 260 ARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKK 439
AR+P K LW KKIDRH+YH +YMK KGNVFKNKRVLME IH+ K
Sbjct: 87 ARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSK 146
Query: 440 AEKARTKMLSDQAEARRNKVK 502
AEKAR K LSDQ EA+R K K
Sbjct: 147 AEKAREKTLSDQFEAKRAKNK 167
>At4g16030.1 68417.m02432 60S ribosomal protein L19, putative
similar to 60S ribosomal protein L19-3
(Swiss-Prot:P49693) [Arabidopsis thaliana]
Length = 101
Score = 45.6 bits (103), Expect = 3e-05
Identities = 20/38 (52%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Frame = +2
Query: 338 KKIDRHLY-HSLYMKAKGNVFKNKRVLMEYIHRKKAEK 448
KKID+ +Y H ++MK KG V+KNK VLME +H+ E+
Sbjct: 29 KKIDKLVYYHDMFMKVKGKVYKNKCVLMESMHKSSRER 66
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = -1
Query: 474 WSLSIFVLAFSAFFLWMYSMSTRL 403
W +S+ ++AFS FF+++Y+ S ++
Sbjct: 1377 WVVSLTLIAFSMFFVFIYAFSVKI 1400
>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
protein
Length = 1332
Score = 28.3 bits (60), Expect = 4.6
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Frame = +2
Query: 362 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNK--VKEAASAARNVLP 535
H L + K K + H+ +K++ KM+ D EA +NK VKEA A ++ +
Sbjct: 495 HGLVSSVPDHSRKRKDIDPSIKHKMVPQKSQ-KMMEDSREAGKNKLGVKEARDAGKSKIS 553
Query: 536 PRRR---NCCRPSLEKTKPRLPLRSKH 607
R P+ K +P+ SKH
Sbjct: 554 LGERLFSYTQEPNPVKPGRVIPVDSKH 580
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 383 KGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAE-ARRNKVKEAASAA 520
KG+ + ++ E + +KK EKAR + ++ AE ARR EAA+ A
Sbjct: 562 KGDPERLRKEREELVLQKKKEKARLQAEAEAAEDARRQAEAEAAAEA 608
>At5g43060.1 68418.m05256 cysteine proteinase, putative / thiol
protease, putative similar to cysteine proteinase RD21A
precursor (thiol protease) GI:435619, SP:P43297 from
[Arabidopsis thaliana]
Length = 463
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -3
Query: 163 GFLMTRPSLIILRMFCLELVFAISLISFGSNH 68
GFL P +++L M + +S+IS+ NH
Sbjct: 2 GFLKLSPMILLLAMIGVSYAMDMSIISYDENH 33
>At5g04710.1 68418.m00480 aspartyl aminopeptidase, putative similar
to SP|Q9ULA0 Aspartyl aminopeptidase (EC 3.4.11.21)
{Homo sapiens}; contains Pfam profile PF02127:
Aminopeptidase I zinc metalloprotease (M18)
Length = 526
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 79 GSNHTFFLPHRITEAASLFCSLRELI 2
G+N+ F R+ AS FC+LR LI
Sbjct: 298 GANNEFIFSGRLDNLASSFCALRALI 323
>At2g25320.1 68415.m03029 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1663
Score = 27.9 bits (59), Expect = 6.1
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 493 IAAGLSLVAKHLRPGLLSLLPVDVLH-EHTLVLEHITLRL 377
IA L KHL+P L+SL+P V H EH L + RL
Sbjct: 974 IALVLDRAPKHLQPDLVSLVPKLVEHSEHPLAALALIERL 1013
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 141 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRR 248
D + KK + + + ++RKN + RR+G G G RR
Sbjct: 77 DVIYWKKLLELENSGKIRKNPKPRRRGDKSGDGFRR 112
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 362 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRNKVKE---AASAARN 526
H + G V + + +++ + AEK ++ +++ ++RR++ + + S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 527 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 610
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Frame = +2
Query: 362 HSLYMKAKGNVFKNKRVLMEYI-HRKKAEK-ARTKMLSDQAEARRNKVKE---AASAARN 526
H + G V + + +++ + AEK ++ +++ ++RR++ + + S R+
Sbjct: 71 HKAVERLDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRS 130
Query: 527 VLPPRRRNCCRPSLEKTKPRLPLRSKHY 610
PPRRR+ R + + R R K Y
Sbjct: 131 RSPPRRRSPRRSRSPRRRSRDDYREKDY 158
>At5g24430.1 68418.m02879 calcium-dependent protein kinase, putative
/ CDPK, putative similar to calcium/calmodulin-dependent
protein kinase CaMK1 [Nicotiana tabacum]
gi|16904222|gb|AAL30818
Length = 594
Score = 27.5 bits (58), Expect = 8.1
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +2
Query: 338 KKIDR-HLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQAEARRNKVKEAAS 514
K++ R H H+ + KAK KN+ V ++ I + K T LS + R K+ +A S
Sbjct: 147 KEVGRGHFGHTCWAKAKKGKMKNQTVAVKIISKAK----MTSTLSIEDVRREVKLLKALS 202
Query: 515 AARNVL 532
R+++
Sbjct: 203 GHRHMV 208
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +2
Query: 335 AKKIDRHLYHSLYMKAKGNVFKNKRVL 415
A K+++ +Y Y KAKG + KN+RVL
Sbjct: 870 AGKVEK-IYDLAYEKAKGMLLKNRRVL 895
>At2g32000.1 68415.m03910 DNA topoisomerase family protein similar
to DNA topoisomerase III beta-1 (EC 5.99.1.2)(SP:Q9Z321)
{Mus musculus}
Length = 865
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 141 DGLVIKKPVAVHSRARVRKNTEARRKGRHCGFGKRRGT 254
D L++ H R+ VR+ R +GR G G RRG+
Sbjct: 816 DELLLSLVEVKHGRSFVRRGGRGRGRGRGRGRGGRRGS 853
>At1g64690.1 68414.m07333 expressed protein
Length = 273
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = +2
Query: 341 KIDRHLYHSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSD---QAEARRNKVKEAA 511
++ R L M V + +RV M+ + + + + L + Q E RN++ +
Sbjct: 142 RMKRDLEEERQMHRLAEVLREERVQMKLMDARLFLEEKLSELEEANRQGERERNRMMKPK 201
Query: 512 SAARNVLPPRRRNCCRPSLEK 574
R P RR C P +++
Sbjct: 202 ILERACSSPARRRCENPQIKR 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,132,407
Number of Sequences: 28952
Number of extensions: 269275
Number of successful extensions: 817
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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