Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30204
(785 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associa... 102 1e-20
UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole... 99 6e-20
UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nucl... 94 3e-18
UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nucl... 93 9e-18
UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1; ... 87 5e-16
UniRef50_Q9FI15 Cluster: Similarity to small nuclear ribonucleop... 84 3e-15
UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babe... 81 2e-14
UniRef50_Q55A45 Cluster: Putative small nuclear ribonucleopartic... 76 9e-13
UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2; Plasm... 73 8e-12
UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B, puta... 72 1e-11
UniRef50_Q5CME6 Cluster: Similar to small nuclear ribonucleoprot... 70 8e-11
UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3; Plasm... 70 8e-11
UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1; ... 67 5e-10
UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 62 1e-08
UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167, w... 61 4e-08
UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB, pu... 60 5e-08
UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associa... 59 1e-07
UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;... 57 6e-07
UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1; ... 56 8e-07
UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core bi... 56 1e-06
UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Re... 55 2e-06
UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein ... 55 2e-06
UniRef50_A3LXX4 Cluster: Predicted protein; n=3; Saccharomycetac... 54 4e-06
UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140... 53 9e-06
UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-... 46 0.001
UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep: ... 44 0.004
UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein... 43 0.008
UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis ... 41 0.031
UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm... 41 0.040
UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core, ... 40 0.053
UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14; ... 40 0.071
UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11; Saccharomyc... 40 0.071
UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA... 40 0.093
UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4; T... 40 0.093
UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA... 39 0.12
UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.12
UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm... 39 0.12
UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis ... 39 0.16
UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4; Eu... 38 0.29
UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12; ... 38 0.29
UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=... 38 0.38
UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog... 38 0.38
UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1; ... 37 0.50
UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicin... 37 0.66
UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p... 36 0.87
UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia... 36 0.87
UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 0.87
UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1; ... 36 0.87
UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2; C... 36 0.87
UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep: At4g... 36 1.2
UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella... 36 1.2
UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genom... 36 1.2
UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, wh... 36 1.2
UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, wh... 36 1.2
UniRef50_Q0UHH8 Cluster: Predicted protein; n=2; Pezizomycotina|... 36 1.2
UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1; Ae... 36 1.2
UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 1.2
UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p... 36 1.5
UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative; ... 36 1.5
UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, wh... 36 1.5
UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm... 36 1.5
UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p... 35 2.0
UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;... 35 2.0
UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1; ... 35 2.0
UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces cere... 35 2.7
UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm... 35 2.7
UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like pr... 35 2.7
UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora cras... 34 3.5
UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 3.5
UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.5
UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1; S... 34 3.5
UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4; ... 34 4.6
UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe gri... 34 4.6
UniRef50_A2QP90 Cluster: Contig An07c0280, complete genome; n=3;... 34 4.6
UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1; C... 34 4.6
UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm... 34 4.6
UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole geno... 33 6.1
UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putati... 33 6.1
UniRef50_A6RWH0 Cluster: Predicted protein; n=10; Pezizomycotina... 33 6.1
UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homol... 33 8.1
UniRef50_Q5FKT7 Cluster: Exodeoxyribonuclease V alpha chain; n=6... 33 8.1
UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2; ... 33 8.1
UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1; ... 33 8.1
UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1... 33 8.1
UniRef50_Q2UPT0 Cluster: Predicted protein; n=2; Aspergillus|Rep... 33 8.1
>UniRef50_P63162 Cluster: Small nuclear ribonucleoprotein-associated
protein N; n=94; Eukaryota|Rep: Small nuclear
ribonucleoprotein-associated protein N - Homo sapiens
(Human)
Length = 240
Score = 102 bits (244), Expect = 1e-20
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.023
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>UniRef50_Q4TAB6 Cluster: Chromosome undetermined SCAF7390, whole
genome shotgun sequence; n=1; Tetraodon
nigroviridis|Rep: Chromosome undetermined SCAF7390,
whole genome shotgun sequence - Tetraodon nigroviridis
(Green puffer)
Length = 268
Score = 99 bits (238), Expect = 6e-20
Identities = 44/65 (67%), Positives = 55/65 (84%)
Frame = +3
Query: 78 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADE 257
T+GK++KM QHI++R+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK +
Sbjct: 9 TVGKSSKMLQHIDFRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPER 68
Query: 258 KKKEL 272
++K +
Sbjct: 69 EEKRV 73
Score = 39.9 bits (89), Expect = 0.071
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI 319
REEKR LG VLLRGEN+VS+T+
Sbjct: 68 REEKRVLGLVLLRGENLVSMTV 89
>UniRef50_UPI0000DA295F Cluster: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein; n=1; Rattus
norvegicus|Rep: PREDICTED: similar to small nuclear
ribonucleoparticle-associated protein - Rattus
norvegicus
Length = 195
Score = 94.3 bits (224), Expect = 3e-18
Identities = 42/67 (62%), Positives = 52/67 (77%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR R LQD R FIG FKAFDKHMN IL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRTRCFLQDGRIFIGIFKAFDKHMNSILCDCDEFRKIKPKNEKQTE 60
Query: 255 EKKKELW 275
++K ++
Sbjct: 61 CEEKRVF 67
>UniRef50_UPI00015561AA Cluster: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N; n=1; Ornithorhynchus
anatinus|Rep: PREDICTED: similar to Small nuclear
ribonucleoprotein polypeptide N - Ornithorhynchus
anatinus
Length = 154
Score = 92.7 bits (220), Expect = 9e-18
Identities = 41/52 (78%), Positives = 47/52 (90%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 230
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK
Sbjct: 103 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 154
>UniRef50_Q6P0Y5 Cluster: Putative uncharacterized protein; n=1;
Homo sapiens|Rep: Putative uncharacterized protein -
Homo sapiens (Human)
Length = 208
Score = 87.0 bits (206), Expect = 5e-16
Identities = 38/66 (57%), Positives = 52/66 (78%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 255 EKKKEL 272
++K +
Sbjct: 101 REEKRV 106
>UniRef50_Q9FI15 Cluster: Similarity to small nuclear
ribonucleoprotein; n=6; Viridiplantae|Rep: Similarity to
small nuclear ribonucleoprotein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 254
Score = 84.2 bits (199), Expect = 3e-15
Identities = 37/66 (56%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSKTA 251
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ +K +K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 252 DEKKKE 269
+E+++E
Sbjct: 61 NEEREE 66
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +2
Query: 245 NCRREEKRTLGFVLLRGENIVSLTI 319
N REE+RTLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>UniRef50_A7ANM8 Cluster: Sm domain containing protein; n=1; Babesia
bovis|Rep: Sm domain containing protein - Babesia bovis
Length = 159
Score = 81.4 bits (192), Expect = 2e-14
Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Frame = +3
Query: 84 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-SKTADEK 260
GKN +MQQ + YRVRV ++D R F+GTF AFDKHMNL+L DCEEFR K K K E
Sbjct: 3 GKNTRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVEL 62
Query: 261 KKELWVLFFYVEKI 302
K+ L + E I
Sbjct: 63 KRTLGFIMLRGENI 76
Score = 36.7 bits (81), Expect = 0.66
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 257 EEKRTLGFVLLRGENIVSLT 316
E KRTLGF++LRGENIVS T
Sbjct: 61 ELKRTLGFIMLRGENIVSFT 80
>UniRef50_Q55A45 Cluster: Putative small nuclear
ribonucleoparticle-associated protein; n=2;
Dictyostelium discoideum|Rep: Putative small nuclear
ribonucleoparticle-associated protein - Dictyostelium
discoideum AX4
Length = 274
Score = 76.2 bits (179), Expect = 9e-13
Identities = 31/59 (52%), Positives = 45/59 (76%)
Frame = +3
Query: 87 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
K++KM Q+INYR+RV +QD R +G F AFDKHMN+++ D EEFR+I+ K + +EK+
Sbjct: 6 KSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKR 64
Score = 37.1 bits (82), Expect = 0.50
Identities = 14/22 (63%), Positives = 20/22 (90%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI 319
REEKRTLG +L+RGE +VS+++
Sbjct: 60 REEKRTLGMILIRGETVVSMSV 81
>UniRef50_Q8ILU8 Cluster: Ribonucleoprotein, putative; n=2;
Plasmodium|Rep: Ribonucleoprotein, putative - Plasmodium
falciparum (isolate 3D7)
Length = 201
Score = 72.9 bits (171), Expect = 8e-12
Identities = 28/61 (45%), Positives = 47/61 (77%)
Frame = +3
Query: 81 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEK 260
+GKN++++ + YRVRV + D+R F+GTF ++D+HMN++L D EEFRK+KS+ + + K
Sbjct: 1 MGKNSRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIK 60
Query: 261 K 263
+
Sbjct: 61 R 61
Score = 33.1 bits (72), Expect = 8.1
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +2
Query: 245 NCRREEKRTLGFVLLRGENIVSLT 316
N +E KR +G +L+RGENIVS T
Sbjct: 54 NSLKEIKRVVGLILIRGENIVSFT 77
>UniRef50_Q4N5C8 Cluster: Small nuclear ribonucleoprotein B,
putative; n=3; Eukaryota|Rep: Small nuclear
ribonucleoprotein B, putative - Theileria parva
Length = 155
Score = 72.1 bits (169), Expect = 1e-11
Identities = 32/66 (48%), Positives = 44/66 (66%)
Frame = +3
Query: 84 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
GKN +MQ + Y VRV L+D+R F+GT A+DK+MNL+L DCEEFR K+ + K+
Sbjct: 3 GKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEVKR 62
Query: 264 KELWVL 281
+VL
Sbjct: 63 TLGFVL 68
Score = 39.9 bits (89), Expect = 0.071
Identities = 19/22 (86%), Positives = 19/22 (86%)
Frame = +2
Query: 251 RREEKRTLGFVLLRGENIVSLT 316
R E KRTLGFVLLRGENIVS T
Sbjct: 57 RTEVKRTLGFVLLRGENIVSFT 78
>UniRef50_Q5CME6 Cluster: Similar to small nuclear
ribonucleoprotein; n=2; Cryptosporidium|Rep: Similar to
small nuclear ribonucleoprotein - Cryptosporidium
hominis
Length = 139
Score = 69.7 bits (163), Expect = 8e-11
Identities = 30/68 (44%), Positives = 45/68 (66%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKELWV 278
MQ++INYR+RV +QD R +G AFD+HMNL+L DC+E+R++ K + E K+ L +
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRV--KKGEEPKELKRSLGL 58
Query: 279 LFFYVEKI 302
+ E I
Sbjct: 59 IMLRGENI 66
>UniRef50_Q4YVP4 Cluster: Ribonucleoprotein, putative; n=3;
Plasmodium (Vinckeia)|Rep: Ribonucleoprotein, putative -
Plasmodium berghei
Length = 194
Score = 69.7 bits (163), Expect = 8e-11
Identities = 26/61 (42%), Positives = 46/61 (75%)
Frame = +3
Query: 81 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEK 260
+GKN +++ + YRVRV + D+R ++GTF ++D+HMN++L D EEFR++K+K + + K
Sbjct: 1 MGKNYRLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEIK 60
Query: 261 K 263
+
Sbjct: 61 R 61
>UniRef50_Q4P7M4 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 232
Score = 66.9 bits (156), Expect = 5e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +3
Query: 87 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 245
K KM INYR+R+ L DSR +G AFD HMNL+L D +E+RK+KS+ +K
Sbjct: 7 KGGKMMSLINYRLRITLNDSRQIVGQLLAFDAHMNLVLADSQEYRKVKSRKAK 59
Score = 35.9 bits (79), Expect = 1.2
Identities = 15/21 (71%), Positives = 19/21 (90%)
Frame = +2
Query: 257 EEKRTLGFVLLRGENIVSLTI 319
E+KRTLG ++LRGENIVS+ I
Sbjct: 95 EQKRTLGLLILRGENIVSMAI 115
>UniRef50_A2EG20 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 158
Score = 62.5 bits (145), Expect = 1e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
M + +K+ + IN RV+V++ D R F+G AFD H N++L DCEE+R++ + +
Sbjct: 1 MQAPRGSKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGELQ 60
Query: 255 EKKKELWVLFFYVEKI 302
E K+ + ++ E +
Sbjct: 61 EAKRNIGLMILRGETV 76
>UniRef50_A0CCJ3 Cluster: Chromosome undetermined scaffold_167,
whole genome shotgun sequence; n=3;
Oligohymenophorea|Rep: Chromosome undetermined
scaffold_167, whole genome shotgun sequence - Paramecium
tetraurelia
Length = 138
Score = 60.9 bits (141), Expect = 4e-08
Identities = 25/47 (53%), Positives = 35/47 (74%)
Frame = +3
Query: 81 IGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
+ + +K Q I+YRVR+ L D R +GTF AFDKH+N+IL +CEE+R
Sbjct: 1 MSQKSKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYR 47
>UniRef50_Q4WP21 Cluster: Small nuclear ribonucleoprotein SmB,
putative; n=2; Eukaryota|Rep: Small nuclear
ribonucleoprotein SmB, putative - Aspergillus fumigatus
(Sartorya fumigata)
Length = 357
Score = 60.5 bits (140), Expect = 5e-08
Identities = 26/47 (55%), Positives = 32/47 (68%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 251
INYR+R+ L D R G AFDKHMNL+L D EEFR++K K+ A
Sbjct: 131 INYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAA 177
>UniRef50_P40018 Cluster: Small nuclear ribonucleoprotein-associated
protein B; n=4; Saccharomycetales|Rep: Small nuclear
ribonucleoprotein-associated protein B - Saccharomyces
cerevisiae (Baker's yeast)
Length = 196
Score = 58.8 bits (136), Expect = 1e-07
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = +3
Query: 72 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 251
K+ + ++++ I+Y++RV+ QD R +IG AFDKHMNL+L +C E R K++ K
Sbjct: 3 KIQVAHSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLR 62
Query: 252 DEK-KKELWVLFFYVEK 299
K K+ L VEK
Sbjct: 63 PRKDSKDGTTLNIKVEK 79
>UniRef50_Q10163 Cluster: Uncharacterized protein C26A3.08; n=38;
Fungi/Metazoa group|Rep: Uncharacterized protein
C26A3.08 - Schizosaccharomyces pombe (Fission yeast)
Length = 147
Score = 56.8 bits (131), Expect = 6e-07
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN--SKTADEKKKE 269
KM +N+ + V +D RTF+G AFD MNL+L DC+E+R IK +N S + E+K+
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64
Query: 270 LWVLFFYVEKI 302
L ++ E I
Sbjct: 65 LGLVILRGEFI 75
Score = 33.1 bits (72), Expect = 8.1
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +2
Query: 257 EEKRTLGFVLLRGENIVSLTI 319
EEKR LG V+LRGE IVSL++
Sbjct: 60 EEKRMLGLVILRGEFIVSLSV 80
>UniRef50_A5E144 Cluster: Putative uncharacterized protein; n=1;
Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
uncharacterized protein - Lodderomyces elongisporus
(Yeast) (Saccharomyces elongisporus)
Length = 152
Score = 56.4 bits (130), Expect = 8e-07
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKE 269
M INYR+R++ D+RT++G+ +FDKH+NL+L D EE R K + ++ +KE
Sbjct: 1 MSDLINYRLRILTVDNRTYVGSLLSFDKHLNLVLSDTEESRITKKSWIEMKNKSQKE 57
>UniRef50_Q59KX5 Cluster: Potential spliceosomal snRNA Sm core
binding protein B/B'; n=1; Candida albicans|Rep:
Potential spliceosomal snRNA Sm core binding protein
B/B' - Candida albicans (Yeast)
Length = 110
Score = 56.0 bits (129), Expect = 1e-06
Identities = 24/49 (48%), Positives = 34/49 (69%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 245
M IN+R+++I D+RT++GT +FDKHMNL+L D EE R K S+
Sbjct: 1 MSDLINFRIKIITIDNRTYLGTLLSFDKHMNLVLSDTEESRITKKSYSQ 49
>UniRef50_Q755T6 Cluster: AER432Cp; n=1; Eremothecium gossypii|Rep:
AER432Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 158
Score = 55.2 bits (127), Expect = 2e-06
Identities = 22/48 (45%), Positives = 33/48 (68%)
Frame = +3
Query: 78 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
T+ + ++ I+Y++RV+ QD R ++GT AFD HMNL+L DC E R
Sbjct: 4 TVSHRSTLKDLIDYKLRVLSQDGRVYVGTLLAFDAHMNLVLADCVEER 51
>UniRef50_UPI0000499A4F Cluster: small nuclear ribonucleoprotein F;
n=1; Entamoeba histolytica HM-1:IMSS|Rep: small nuclear
ribonucleoprotein F - Entamoeba histolytica HM-1:IMSS
Length = 205
Score = 54.8 bits (126), Expect = 2e-06
Identities = 26/61 (42%), Positives = 41/61 (67%)
Frame = +3
Query: 87 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKK 266
K++K+ ++INY ++V + R F+G F AFDK+MN+IL + E R + N KT +EK+
Sbjct: 4 KSSKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTV--INKKTREEKEI 61
Query: 267 E 269
E
Sbjct: 62 E 62
>UniRef50_A3LXX4 Cluster: Predicted protein; n=3;
Saccharomycetaceae|Rep: Predicted protein - Pichia
stipitis (Yeast)
Length = 142
Score = 54.0 bits (124), Expect = 4e-06
Identities = 25/52 (48%), Positives = 34/52 (65%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 230
+ I K KM I+YR+++ D+R FIG+ AFDKH+NL+L D EE R K
Sbjct: 4 LPITKTTKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITK 55
>UniRef50_Q6CWY1 Cluster: Kluyveromyces lactis strain NRRL Y-1140
chromosome B of strain NRRL Y- 1140 of Kluyveromyces
lactis; n=1; Kluyveromyces lactis|Rep: Kluyveromyces
lactis strain NRRL Y-1140 chromosome B of strain NRRL Y-
1140 of Kluyveromyces lactis - Kluyveromyces lactis
(Yeast) (Candida sphaerica)
Length = 191
Score = 52.8 bits (121), Expect = 9e-06
Identities = 22/45 (48%), Positives = 29/45 (64%)
Frame = +3
Query: 87 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
K K+ I+YR+RV D R +IG AFD +MNL++GDC E R
Sbjct: 9 KETKLSDLIDYRIRVATHDGRVYIGQLMAFDAYMNLVMGDCVEER 53
>UniRef50_Q9W087 Cluster: CG2021-PA; n=14; Eukaryota|Rep: CG2021-PA
- Drosophila melanogaster (Fruit fly)
Length = 95
Score = 45.6 bits (103), Expect = 0.001
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +IN+ V +I D R FIGT K FD+ +N+I+ +C E
Sbjct: 4 LESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHE 42
>UniRef50_A7T7F0 Cluster: Predicted protein; n=3; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 86
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKS 233
+++ +N +RV + D RT IG+F DK N+ILG C+EF + S
Sbjct: 3 ELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLS 48
>UniRef50_Q4D159 Cluster: Small nuclear ribonucleoprotein protein,
putative; n=5; Trypanosomatidae|Rep: Small nuclear
ribonucleoprotein protein, putative - Trypanosoma cruzi
Length = 114
Score = 43.2 bits (97), Expect = 0.008
Identities = 20/51 (39%), Positives = 31/51 (60%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 251
M +IN +R++L D R G +D+HMN++LGD E R+ ++K K A
Sbjct: 6 MLHNINRTLRIVLIDGRELTGKLLVYDRHMNVVLGDATESRE-ETKKMKEA 55
>UniRef50_A2F7C1 Cluster: Sm protein; n=1; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 99
Score = 41.1 bits (92), Expect = 0.031
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +3
Query: 51 YLPN--HSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
Y+P+ H + G ++ +N ++R+ L D R ++GTF AFDK N +L +E+
Sbjct: 6 YIPSILHLPEHPTGAVKEVMDLLNTQLRLELNDERVYVGTFTAFDKFGNFVLTKADEY 63
>UniRef50_P57743 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=2; Saccharomyces cerevisiae|Rep: U6 snRNA-associated
Sm-like protein LSm3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 89
Score = 40.7 bits (91), Expect = 0.040
Identities = 19/62 (30%), Positives = 37/62 (59%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKELWV 278
++ +++ RV + L+ +RT +GT +AFD H N++L D E I N++ E ++ +
Sbjct: 8 LKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE--TIYQLNNEELSESERRCEM 65
Query: 279 LF 284
+F
Sbjct: 66 VF 67
>UniRef50_Q17E06 Cluster: Small nuclear ribonucleoprotein, core,
putative; n=2; Culicidae|Rep: Small nuclear
ribonucleoprotein, core, putative - Aedes aegypti
(Yellowfever mosquito)
Length = 162
Score = 40.3 bits (90), Expect = 0.053
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +3
Query: 54 LPNHSDKMTIGKN-NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
L N + + I + + ++ ++N V +I D R F+GT K FD+ +N+IL + E
Sbjct: 55 LSNRNQRYDIHETMSGLESYVNTTVSIITADGRNFVGTLKGFDQTINIILDESHE 109
>UniRef50_A2BIG9 Cluster: LSM domain-containing protein 1; n=14;
Euteleostomi|Rep: LSM domain-containing protein 1 -
Danio rerio (Zebrafish) (Brachydanio rerio)
Length = 109
Score = 39.9 bits (89), Expect = 0.071
Identities = 19/56 (33%), Positives = 33/56 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
K++ +N +R+ + D RT +G F D+ N+ILG +EF +KS +S + E +
Sbjct: 27 KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEF--LKSTDSLSQGEPR 80
>UniRef50_P47017 Cluster: Sm-like protein LSm1; n=11;
Saccharomycetales|Rep: Sm-like protein LSm1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 172
Score = 39.9 bits (89), Expect = 0.071
Identities = 19/51 (37%), Positives = 32/51 (62%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
++ ++ V+L+D R G + FD++ NLIL DC E R S+ +K A+E +
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE-RIYFSEENKYAEEDR 99
>UniRef50_UPI0000D55DF4 Cluster: PREDICTED: similar to CG31950-PA;
n=2; Endopterygota|Rep: PREDICTED: similar to CG31950-PA
- Tribolium castaneum
Length = 134
Score = 39.5 bits (88), Expect = 0.093
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
K++ +N +R+ + D R +G F D+ N+ILG C E+ + T +E +
Sbjct: 38 KLRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTIEEPR 93
>UniRef50_Q979R0 Cluster: Small nuclear ribonucleoprotein; n=4;
Thermoplasmatales|Rep: Small nuclear ribonucleoprotein -
Thermoplasma volcanium
Length = 71
Score = 39.5 bits (88), Expect = 0.093
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
+++ +N RV ++L+D+R GT +D +MN++L D +E
Sbjct: 8 LEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDE 46
>UniRef50_UPI0000513250 Cluster: PREDICTED: similar to CG31950-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to
CG31950-PA - Apis mellifera
Length = 103
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
K++ +N +R+ + D R IG F D+ N+ILG C EF
Sbjct: 35 KLRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEF 75
>UniRef50_A5K5F8 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Plasmodium|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Plasmodium vivax
Length = 95
Score = 39.1 bits (87), Expect = 0.12
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ ++ + VI DSR F G K FD+ N+ILG+C E
Sbjct: 6 IESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCYE 44
>UniRef50_O95777 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=23; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm8 - Homo sapiens (Human)
Length = 96
Score = 39.1 bits (87), Expect = 0.12
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>UniRef50_A2E014 Cluster: Sm protein; n=2; Trichomonas vaginalis
G3|Rep: Sm protein - Trichomonas vaginalis G3
Length = 84
Score = 38.7 bits (86), Expect = 0.16
Identities = 20/61 (32%), Positives = 34/61 (55%)
Frame = +3
Query: 120 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKELWVLFFYVEK 299
RV+V +Q+ + G A+D+H N+ILGD E KN K ++ ++ +LF ++
Sbjct: 18 RVKVKVQEGQELEGVLHAYDEHYNIILGDVLESIMGLDKNGKFIPVRQNQIDMLFVRGDR 77
Query: 300 I 302
I
Sbjct: 78 I 78
>UniRef50_O26745 Cluster: Putative snRNP Sm-like protein; n=4;
Euryarchaeota|Rep: Putative snRNP Sm-like protein -
Methanobacterium thermoautotrophicum
Length = 81
Score = 37.9 bits (84), Expect = 0.29
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
+N V + L+ R F G K+FD HMNL+L D EE
Sbjct: 22 LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE 56
>UniRef50_Q9BRA0 Cluster: LSM domain-containing protein 1; n=12;
Theria|Rep: LSM domain-containing protein 1 - Homo
sapiens (Human)
Length = 125
Score = 37.9 bits (84), Expect = 0.29
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E +
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEPR 97
>UniRef50_Q5CLJ8 Cluster: U6 snRNA-associated sm-like protein; n=2;
Cryptosporidium|Rep: U6 snRNA-associated sm-like protein
- Cryptosporidium hominis
Length = 98
Score = 37.5 bits (83), Expect = 0.38
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKE 269
++ ++Q IN V V+ D++ ++G FD+ N++L +C E KI +K+ + E
Sbjct: 3 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCSE--KIYNKDLNKVETVSME 60
Query: 270 LWVL 281
VL
Sbjct: 61 SLVL 64
>UniRef50_Q8ZYG5 Cluster: Small nuclear ribonucleoprotein homolog;
n=5; Thermoproteaceae|Rep: Small nuclear
ribonucleoprotein homolog - Pyrobaculum aerophilum
Length = 80
Score = 37.5 bits (83), Expect = 0.38
Identities = 17/39 (43%), Positives = 25/39 (64%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
+Q I +V V L+DS G ++FD+H+NL+L D EE
Sbjct: 16 LQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEE 54
>UniRef50_Q0ULJ4 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 234
Score = 37.1 bits (82), Expect = 0.50
Identities = 13/57 (22%), Positives = 34/57 (59%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKELWVL 281
++ +V V+L+D + +IG +++D+ NL+L +C E ++ +++ + W++
Sbjct: 101 VDKKVDVLLRDEKEYIGILRSYDQFANLVLTECHERIAARNPDAEPSSAPSVPRWLI 157
>UniRef50_Q014C2 Cluster: Small Nuclear ribonucleoprotein splicing
factor; n=1; Ostreococcus tauri|Rep: Small Nuclear
ribonucleoprotein splicing factor - Ostreococcus tauri
Length = 110
Score = 36.7 bits (81), Expect = 0.66
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ RV V+ D R +GT + FD+ N+IL DC E
Sbjct: 12 VHARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAE 46
>UniRef50_Q8IGW7 Cluster: RE11655p; n=12; Eukaryota|Rep: RE11655p -
Drosophila melanogaster (Fruit fly)
Length = 103
Score = 36.3 bits (80), Expect = 0.87
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKK 266
++ +V V +++ R G AFD+H+N++LGD EE + +T +E K
Sbjct: 26 LDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVEIDEETYEEVYK 77
>UniRef50_Q7QPB0 Cluster: GLP_122_3813_3433; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_122_3813_3433 - Giardia lamblia ATCC
50803
Length = 126
Score = 36.3 bits (80), Expect = 0.87
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 120 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
RV V+LQ++ + G +FD+HMNLIL + EE
Sbjct: 64 RVSVLLQNNSSITGLLASFDEHMNLILINAEE 95
>UniRef50_Q4MZU2 Cluster: U6 snRNA-associated Sm-like protein LSm8,
putative; n=2; Piroplasmida|Rep: U6 snRNA-associated
Sm-like protein LSm8, putative - Theileria parva
Length = 94
Score = 36.3 bits (80), Expect = 0.87
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++Q I V VI D R F+G K FD+ NL+L +C E
Sbjct: 5 LEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLE 43
>UniRef50_A4VDT4 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 107
Score = 36.3 bits (80), Expect = 0.87
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +3
Query: 93 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 248
N +++ + ++++I D + IG K D+ +N IL DC E N+KT
Sbjct: 15 NPLEKLLFKKIQIITTDGKVLIGILKGLDQALNSILSDCVERVFSSENNTKT 66
>UniRef50_A3FQL7 Cluster: Small nuclear ribonucleoprotein; n=2;
Cryptosporidium|Rep: Small nuclear ribonucleoprotein -
Cryptosporidium parvum Iowa II
Length = 106
Score = 36.3 bits (80), Expect = 0.87
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEK 260
N ++ V +++R +G KAFD+H NL+L D E K+ K K
Sbjct: 32 NTQILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKGSAK 80
>UniRef50_Q6NNL2 Cluster: At4g18372; n=4; Magnoliophyta|Rep:
At4g18372 - Arabidopsis thaliana (Mouse-ear cress)
Length = 78
Score = 35.9 bits (79), Expect = 1.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 135 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEK 260
++D R F+G F DK N+IL D E+R I+ + +++
Sbjct: 5 IKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQR 46
>UniRef50_Q3LVZ4 Cluster: MRNA splicing factor; n=1; Bigelowiella
natans|Rep: MRNA splicing factor - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 101
Score = 35.9 bits (79), Expect = 1.2
Identities = 15/50 (30%), Positives = 29/50 (58%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEK 260
+N ++ + D+ F G + FDKH NL+L D E K ++ ++++ +K
Sbjct: 27 LNSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKK 76
>UniRef50_A7P4Z8 Cluster: Chromosome chr4 scaffold_6, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr4 scaffold_6, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 145
Score = 35.9 bits (79), Expect = 1.2
Identities = 20/68 (29%), Positives = 36/68 (52%)
Frame = +3
Query: 57 PNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSK 236
PN S+ +T K++ + R+ V + D R F+G+F DK N+IL D E+R +
Sbjct: 51 PNGSNPVT-----KVRMLLFRRMLVGVSDGRFFLGSFHCMDKQGNIILQDTVEYRSTRRS 105
Query: 237 NSKTADEK 260
+ +++
Sbjct: 106 SPSPMEQR 113
>UniRef50_A0D2M7 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 83
Score = 35.9 bits (79), Expect = 1.2
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
K+Q HIN V + Q R GT +FD +NL+L + E
Sbjct: 11 KLQSHINKEVVIQFQGGRQVKGTLLSFDNQLNLVLDEVRE 50
>UniRef50_A0CQT6 Cluster: Chromosome undetermined scaffold_24, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_24,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 152
Score = 35.9 bits (79), Expect = 1.2
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Frame = +3
Query: 135 LQDSRTFIGTFKAFDKHMNLILGDCEEF-----RKIKSKNSKTADEK-KKELWVLFFYVE 296
L+++R +G KAFD+HMN+IL + E ++ K K+ K + + ++F+Y+
Sbjct: 76 LRNNRKHLGRVKAFDRHMNMILENLTEMWIEISKETKGKSPCYKQRKIQNQYKIIFYYIP 135
Query: 297 KI 302
K+
Sbjct: 136 KM 137
>UniRef50_Q0UHH8 Cluster: Predicted protein; n=2;
Pezizomycotina|Rep: Predicted protein - Phaeosphaeria
nodorum (Septoria nodorum)
Length = 98
Score = 35.9 bits (79), Expect = 1.2
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEK 260
+ ++N RV V+ D RT IGT + D MNL+L + E R I+ + + E+
Sbjct: 3 LNAYLNKRVTVLTLDGRTMIGTLFSCDGSMNLVLQEAVE-RIIRPREEEVPSEE 55
>UniRef50_Q9YEQ5 Cluster: Putative snRNP Sm-like protein; n=1;
Aeropyrum pernix|Rep: Putative snRNP Sm-like protein -
Aeropyrum pernix
Length = 77
Score = 35.9 bits (79), Expect = 1.2
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 66 SDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
S +T+ M +++ V V L+ G K +D+H+N+ILGD EE
Sbjct: 2 SGPITLPTLRMMLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE 51
>UniRef50_P40089 Cluster: U6 snRNA-associated Sm-like protein LSm5;
n=5; Saccharomycetales|Rep: U6 snRNA-associated Sm-like
protein LSm5 - Saccharomyces cerevisiae (Baker's yeast)
Length = 93
Score = 35.9 bits (79), Expect = 1.2
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
IN +V ++LQ +R F GT FD +N+IL D E+
Sbjct: 16 INQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEW 51
>UniRef50_Q4V620 Cluster: IP06106p; n=3; Sophophora|Rep: IP06106p -
Drosophila melanogaster (Fruit fly)
Length = 121
Score = 35.5 bits (78), Expect = 1.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
+T G+ K+Q+ + +R+++ D R +G F D+ N++L C E+
Sbjct: 38 LTPGRR-KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEY 84
>UniRef50_Q4MYV9 Cluster: U6 snRNA-associated protein, putative;
n=2; Theileria|Rep: U6 snRNA-associated protein,
putative - Theileria parva
Length = 104
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+ +H+N V V R G + D NL+L D E+ K S +SK EK+
Sbjct: 17 LNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKLTGEKR 71
>UniRef50_A0D0Y9 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 104
Score = 35.5 bits (78), Expect = 1.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 84 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
G + ++ R+++ L RT IGT FD MNL+L C+E
Sbjct: 13 GYQADLNKYFGKRLKIKLNAKRTIIGTVIGFDIFMNLVLDHCKE 56
>UniRef50_P62310 Cluster: U6 snRNA-associated Sm-like protein LSm3;
n=39; Eukaryota|Rep: U6 snRNA-associated Sm-like protein
LSm3 - Homo sapiens (Human)
Length = 102
Score = 35.5 bits (78), Expect = 1.5
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>UniRef50_Q6QA14 Cluster: Lsm8p; n=6; Trypanosomatidae|Rep: Lsm8p -
Trypanosoma brucei
Length = 129
Score = 35.1 bits (77), Expect = 2.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
+ Q++ RV V+ D R +G A D+ MNL+L C E
Sbjct: 2 LSQYLRRRVSVVTVDGRYLVGVLHAADQLMNLVLTSCAE 40
>UniRef50_Q5K8A9 Cluster: RNA cap binding protein, putative; n=1;
Filobasidiella neoformans|Rep: RNA cap binding protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 135
Score = 35.1 bits (77), Expect = 2.0
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +V VIL+D R IG F+++D+ N +L C E
Sbjct: 17 VDKKVLVILRDGRKLIGLFRSYDQFANFLLESCVE 51
>UniRef50_Q2HFG8 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 189
Score = 35.1 bits (77), Expect = 2.0
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
+++ IN +RV DSR F GTF D NLIL E+R
Sbjct: 17 LERLINKNLRVTTTDSRMFWGTFVCTDHESNLILKHAYEYR 57
>UniRef50_Q1DNR5 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 101
Score = 35.1 bits (77), Expect = 2.0
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
++ +N VR+ D+R F+G FK D N+IL + E+R
Sbjct: 10 LESLLNRTVRLHTSDTRLFVGLFKCTDNDRNIILSNTYEYR 50
>UniRef50_Q6BK43 Cluster: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like; n=1; Debaryomyces
hansenii|Rep: Similar to sp|P40089 Saccharomyces
cerevisiae YER146w LSM5 Sm-like - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 93
Score = 34.7 bits (76), Expect = 2.7
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
+ + I ++++V++ + + F GT FD ++N++L + EEF
Sbjct: 27 IDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEF 66
>UniRef50_Q05E36 Cluster: Putative small nucleolar RNP protein Sm;
n=1; Aeropyrum pernix|Rep: Putative small nucleolar RNP
protein Sm - Aeropyrum pernix
Length = 94
Score = 34.7 bits (76), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 72 KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
K + +++H+N ++ V L+D ++G A D MNLIL D E
Sbjct: 7 KQLVNPFKYLKEHLNSQIYVKLKDGSEYVGKLVATDTTMNLILDDAIE 54
>UniRef50_Q9Y7M4 Cluster: Probable U6 snRNA-associated Sm-like
protein LSm3; n=8; Ascomycota|Rep: Probable U6
snRNA-associated Sm-like protein LSm3 -
Schizosaccharomyces pombe (Fission yeast)
Length = 93
Score = 34.7 bits (76), Expect = 2.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 123 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
V V L+ R G A+D+H+N++LGD EE I D+ K +
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTI 71
>UniRef50_Q7SG45 Cluster: Predicted protein; n=1; Neurospora
crassa|Rep: Predicted protein - Neurospora crassa
Length = 178
Score = 34.3 bits (75), Expect = 3.5
Identities = 23/62 (37%), Positives = 30/62 (48%)
Frame = +3
Query: 36 PNI**YLPNHSDKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
PNI +LP D T N+ + N +RV + D R F G FK D N+IL E
Sbjct: 5 PNIT-FLPEDRDDATDWLNSLL----NKNLRVSVTDGRMFWGQFKCVDAESNIILHSAYE 59
Query: 216 FR 221
+R
Sbjct: 60 YR 61
>UniRef50_A4RG53 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 128
Score = 34.3 bits (75), Expect = 3.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
+N +RV D+R F G FK D NLIL E+R
Sbjct: 14 LNKYLRVTTTDTRMFYGVFKCTDPDRNLILAHAHEYR 50
>UniRef50_Q701X8 Cluster: Putative uncharacterized protein; n=1;
uncultured crenarchaeote|Rep: Putative uncharacterized
protein - uncultured crenarchaeote
Length = 89
Score = 34.3 bits (75), Expect = 3.5
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+Q+ + V V L+ R+ G K FDK MN+++ + E + +S N+ +++ K
Sbjct: 11 LQESVGKIVLVKLKGRRSVKGKIKGFDKQMNIVITEATEVIEQQSNNNDNSEKGK 65
>UniRef50_A3DP35 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Staphylothermus marinus F1|Rep: Like-Sm
ribonucleoprotein, core - Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1)
Length = 91
Score = 34.3 bits (75), Expect = 3.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
++ +N V V ++D +IGT D MN++L +C+E+
Sbjct: 15 LKSAVNQIVLVKIKDGHEYIGTLNMVDHTMNVVLSNCQEY 54
>UniRef50_O42978 Cluster: U6 snRNP-associated protein Lsm5; n=4;
Eukaryota|Rep: U6 snRNP-associated protein Lsm5 -
Schizosaccharomyces pombe (Fission yeast)
Length = 80
Score = 33.9 bits (74), Expect = 4.6
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MTI + + I + VI++ R F GT FD ++N++L D E+ + K ++
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62
>UniRef50_A4RDX2 Cluster: Predicted protein; n=1; Magnaporthe
grisea|Rep: Predicted protein - Magnaporthe grisea (Rice
blast fungus) (Pyricularia grisea)
Length = 992
Score = 33.9 bits (74), Expect = 4.6
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = -1
Query: 494 LVPCVVEMARLLLWQDLEDPEVLRPGQCLYQQHEHFQARP*LPVRE 357
++P V++ A LLLWQ+ PE LRPG + E+ + L R+
Sbjct: 662 VMPQVLKAAGLLLWQEGRSPEALRPGTYVPLNAENLRVHTELQQRD 707
>UniRef50_A2QP90 Cluster: Contig An07c0280, complete genome; n=3;
Trichocomaceae|Rep: Contig An07c0280, complete genome -
Aspergillus niger
Length = 275
Score = 33.9 bits (74), Expect = 4.6
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
I +RV D+R F+GTFK D N+IL E+R
Sbjct: 14 IGRTLRVHATDTRIFVGTFKCTDAARNIILASTYEYR 50
>UniRef50_A7DR38 Cluster: Like-Sm ribonucleoprotein, core; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Like-Sm
ribonucleoprotein, core - Candidatus Nitrosopumilus
maritimus SCM1
Length = 78
Score = 33.9 bits (74), Expect = 4.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
+ + IN V + L+ ++T G FD+HMNL+L EE
Sbjct: 10 LDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLDSSEE 48
>UniRef50_O74483 Cluster: U6 snRNA-associated Sm-like protein LSm8;
n=1; Schizosaccharomyces pombe|Rep: U6 snRNA-associated
Sm-like protein LSm8 - Schizosaccharomyces pombe
(Fission yeast)
Length = 94
Score = 33.9 bits (74), Expect = 4.6
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 120 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
RV+VI D R +G+ K FD NLIL D E
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41
>UniRef50_A7Q0D5 Cluster: Chromosome chr7 scaffold_42, whole genome
shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
chr7 scaffold_42, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 170
Score = 33.5 bits (73), Expect = 6.1
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Frame = +3
Query: 60 NHSDKMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKS 233
N ++ + G + + + +V++ ++++ +G +AFD+H N++L E R++ +
Sbjct: 75 NEGEEFSTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL---ENVREMWT 131
Query: 234 KNSKTADEKKK 266
+ KT KKK
Sbjct: 132 EVPKTGKGKKK 142
>UniRef50_A7AWS6 Cluster: Small nuclear ribonucleoprotein, putative;
n=1; Babesia bovis|Rep: Small nuclear ribonucleoprotein,
putative - Babesia bovis
Length = 162
Score = 33.5 bits (73), Expect = 6.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
N +V + + +R +G KAFD+H N+IL D E
Sbjct: 90 NSQVLINCRSNRKLLGRVKAFDRHFNMILTDVRE 123
>UniRef50_A6RWH0 Cluster: Predicted protein; n=10;
Pezizomycotina|Rep: Predicted protein - Botryotinia
fuckeliana B05.10
Length = 98
Score = 33.5 bits (73), Expect = 6.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
+ ++N +V ++ DSRT +GT + D+ NL+L E
Sbjct: 3 LSSYVNKKVLILTADSRTLVGTLLSCDQQTNLVLSQTIE 41
>UniRef50_UPI000021D358 Cluster: PREDICTED: similar to LSM3 homolog,
U6 small nuclear RNA associated; n=3; Homo/Pan/Gorilla
group|Rep: PREDICTED: similar to LSM3 homolog, U6 small
nuclear RNA associated - Homo sapiens
Length = 101
Score = 33.1 bits (72), Expect = 8.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 120 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
R+ V +++ R G +D+H+N+ILGD EE
Sbjct: 27 RICVKMRNDRELRGRLHTYDQHLNMILGDVEE 58
>UniRef50_Q5FKT7 Cluster: Exodeoxyribonuclease V alpha chain; n=6;
Lactobacillus|Rep: Exodeoxyribonuclease V alpha chain -
Lactobacillus acidophilus
Length = 784
Score = 33.1 bits (72), Expect = 8.1
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 129 VILQDSRTFIGTFKAF--DKHMNLILGDCEEFRKIKSKNSKTADEKKKE 269
V++ DSR F+ FK D+ L CE+ IK+KN+ DEK KE
Sbjct: 701 VLVGDSRAFLAAFKTAGNDRKTGLSEKICEQL-DIKTKNTSDEDEKVKE 748
>UniRef50_Q9AVX5 Cluster: Small nuclear ribonucleoprotein SM D2;
n=1; Guillardia theta|Rep: Small nuclear
ribonucleoprotein SM D2 - Guillardia theta (Cryptomonas
phi)
Length = 82
Score = 33.1 bits (72), Expect = 8.1
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 123 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKELWVLFFYVEKI 302
V +IL++++ IG +DKH+NL+L + E + + S+ K K + +F + I
Sbjct: 17 VMIILRNNKRMIGKIINYDKHLNLLLENVNEIKFVGENFSELIKIKSKFIPKVFLRGDNI 76
>UniRef50_Q54W83 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 129
Score = 33.1 bits (72), Expect = 8.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ ++ V+L+D R FIG + FD+ N++L D E
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE 43
>UniRef50_Q8SR04 Cluster: SMALL NUCLEAR RIBONUCLEOPROTEIN D2; n=1;
Encephalitozoon cuniculi|Rep: SMALL NUCLEAR
RIBONUCLEOPROTEIN D2 - Encephalitozoon cuniculi
Length = 135
Score = 33.1 bits (72), Expect = 8.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 123 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN 239
V V L+ +R +G A+D+H NL++ D +E + KN
Sbjct: 35 VLVSLRSNRKVLGRVVAYDRHYNLLMEDAKELGTTRGKN 73
>UniRef50_Q2UPT0 Cluster: Predicted protein; n=2; Aspergillus|Rep:
Predicted protein - Aspergillus oryzae
Length = 118
Score = 33.1 bits (72), Expect = 8.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 221
++ I +RV D+R F+G FK D N+IL E+R
Sbjct: 10 LESLIGQTLRVHATDTRIFVGAFKCTDSARNIILASTYEYR 50
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,812,737
Number of Sequences: 1657284
Number of extensions: 10576420
Number of successful extensions: 29233
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 28245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29224
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66673674990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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