Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30204
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    57   3e-09
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha...    35   0.015
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch...    34   0.027
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch...    34   0.027
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar...    31   0.19 
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo...    31   0.25 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    29   1.00 
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.7  
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy...    28   1.7  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   4.0  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.3  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   9.3  

>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
 Frame = +3

Query: 96  KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN--SKTADEKKKE 269
           KM   +N+ + V  +D RTF+G   AFD  MNL+L DC+E+R IK +N  S +  E+K+ 
Sbjct: 5   KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRM 64

Query: 270 LWVLFFYVEKI 302
           L ++    E I
Sbjct: 65  LGLVILRGEFI 75



 Score = 33.1 bits (72), Expect = 0.046
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 257 EEKRTLGFVLLRGENIVSLTI 319
           EEKR LG V+LRGE IVSL++
Sbjct: 60  EEKRMLGLVILRGEFIVSLSV 80


>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
           Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 93

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 123 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
           V V L+  R   G   A+D+H+N++LGD EE   I        D+  K +
Sbjct: 22  VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTI 71


>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 94

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 120 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
           RV+VI  D R  +G+ K FD   NLIL D  E
Sbjct: 10  RVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41


>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
           Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 80

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = +3

Query: 75  MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
           MTI     + + I   + VI++  R F GT   FD ++N++L D  E+  +     K ++
Sbjct: 3   MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE 62


>SPCC285.12 |lsm7||U6 snRNP-associated protein
           Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 99  MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
           + ++ + R++      R   G  K FD+ MNL+L D EE
Sbjct: 28  LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66


>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
           Smd2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 115

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = +3

Query: 72  KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 245
           + + G  + +QQ +    +V++  ++++  +   KAFD+H N++L   E  +++ ++  +
Sbjct: 24  EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVL---ENVKEMWTEKKR 80

Query: 246 TADEKK 263
           TA  KK
Sbjct: 81  TASGKK 86


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 523  EEEQKLTTISWCHVLLRWPAYSSGRTLK 440
            E+E +L T S C  LL+ P YS+ +TL+
Sbjct: 986  EDETRLPTASTCVNLLKLPMYSTKQTLR 1013


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 269 FFFLLVCSFTIFRFNFSEFFAIT*Y*IHVFIKSFKSSNKCTRV 141
           FFFL VC F  F F+ S   ++    + + ++ F + ++  R+
Sbjct: 158 FFFLCVCVFLSFLFSLSHLLSLAILFLPLLLRVFSTLSRLPRL 200


>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 84

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 99  MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 245
           +QQH    + +  Q      G  + FD+ MN++L D  +   + +KN+K
Sbjct: 20  LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNNK 65


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 26/86 (30%), Positives = 41/86 (47%)
 Frame = -2

Query: 772 DSLSRQHVHHSTNFMFHTQNQRIILNF*YSTVFNNINHKSLHCT*TNSVAFLEDPVLAHH 593
           D L  +H+ HS NF+ +T    +     + T  ++I   +L C   N+V   E  +    
Sbjct: 386 DGLLGRHLAHS-NFLKYTAETELTDKSRW-TRLDSIAVVAL-CNSLNAVGIAESVM---- 438

Query: 592 DPCQEELPSFLEEGHPSWGLLAFEEE 515
           DP   +LP+  EE   + GLLA+  E
Sbjct: 439 DPFGGKLPTTYEETSSATGLLAYPNE 464


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 501 VVNFCSSSNARRPHDGWPSSRNDGSSS 581
           ++N  S SNA  PH+ W S     S+S
Sbjct: 4   LLNSVSFSNASNPHNAWGSENISNSNS 30


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +2

Query: 623 CDAISLSAVQ*FVIYIIKNSAVSKVENYPLIL--CMKHEICTMVDMLS 760
           CD   L AV+  V++    +   ++ENYPL+L   + + I  M +M+S
Sbjct: 851 CDHYRLLAVK--VLFTQDQAWFDQIENYPLVLSKILVNNISDMRNMIS 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,695,534
Number of Sequences: 5004
Number of extensions: 48536
Number of successful extensions: 136
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)