Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30204
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0479 + 3606663-3607448                                           83   2e-16
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297     37   0.021
06_03_1120 - 27765613-27765963                                         34   0.15 
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184...    34   0.15 
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332...    33   0.19 
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488...    32   0.59 
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032...    31   0.79 
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619     30   1.8  
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962...    30   2.4  
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296...    29   4.2  
02_05_0887 + 32516255-32517292                                         29   5.5  

>07_01_0479 + 3606663-3607448
          Length = 261

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 37/65 (56%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
 Frame = +3

Query: 75  MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSKTA 251
           M+  K +KM Q +NYR+RV +QD R  +G F AFD+HMNL+LGDCEEFRK+  SK+SKT 
Sbjct: 1   MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTT 60

Query: 252 DEKKK 266
            E+++
Sbjct: 61  GEREE 65



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 15/22 (68%), Positives = 20/22 (90%)
 Frame = +2

Query: 254 REEKRTLGFVLLRGENIVSLTI 319
           REE+RTLG +LLRGE +VS+T+
Sbjct: 63  REERRTLGLLLLRGEEVVSMTV 84


>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
          Length = 104

 Score = 36.7 bits (81), Expect = 0.021
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +3

Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADE 257
           ++ R+ V L+  R   G   A+D+H+N+ILGD EE       + +T +E
Sbjct: 27  LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEE 75


>06_03_1120 - 27765613-27765963
          Length = 116

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = +3

Query: 96  KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 251
           K+++ +  R+ V + D R F+G F   DK  N++L D  E+R    + S ++
Sbjct: 24  KLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTSARRRSPSS 75


>05_03_0462 -
           14316486-14316602,14316689-14316793,14318406-14318486,
           14318593-14318610
          Length = 106

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 17/53 (32%), Positives = 32/53 (60%)
 Frame = +3

Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
           N +V +  ++++  +G  +AFD+H N++L   E  R++ ++  KT   KKK L
Sbjct: 31  NTQVLINCRNNKKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 80


>01_07_0305 -
           42631214-42631330,42631423-42631527,42633208-42633216,
           42635198-42636142,42636349-42636450,42637210-42637302
          Length = 456

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +3

Query: 120 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
           +V +  Q+++  +G  +AFD H N++L   E  R++ ++  KT   KKK L
Sbjct: 383 KVLINCQNNKKLLGRVRAFDSHCNMVL---ENVREMWTEVPKTGKGKKKAL 430


>03_04_0043 +
           16747103-16747137,16747237-16747259,16748735-16748856,
           16748980-16749042
          Length = 80

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 11/44 (25%), Positives = 29/44 (65%)
 Frame = +3

Query: 84  GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
           G+   ++++++ ++++ L  +R  +GT + FD+ MNL++ +  E
Sbjct: 5   GQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE 48


>05_07_0342 +
           29402867-29402906,29403012-29403052,29403146-29403220,
           29403523-29403648,29404195-29404247,29404385-29404475
          Length = 141

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 99  MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
           ++  ++  + VI  D R  +GT + FD+  N+IL +  E
Sbjct: 8   LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46


>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
          Length = 398

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 102 QQHINYRVRVILQDSRTFIGTFKAFDKHMN 191
           +Q++N + R  + D  +FIG++K   KH+N
Sbjct: 152 RQYLNRKKRACMHDGCSFIGSYKELCKHVN 181


>05_04_0169 -
           18694418-18694453,18694516-18694627,18696095-18696243,
           18696980-18697033,18697110-18697222,18697323-18697374
          Length = 171

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
           I  ++ VI++  +  +GT   FD ++N++L D  E+
Sbjct: 88  IGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY 123


>08_01_0328 +
           2959014-2959055,2959336-2959398,2960871-2960949,
           2961038-2961083,2961566-2961671
          Length = 111

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 99  MQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKT 248
           M Q I  R+++ L  Q      G    FD++MNL+L D EE   +K    K+
Sbjct: 10  MTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI-NVKKDTRKS 60


>02_05_0887 + 32516255-32517292
          Length = 345

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 102 QQHINYRVRVILQDSRTFIGTFKAFDKHM 188
           + ++N + R  +QD  +F+GT+K   KH+
Sbjct: 149 RSYLNGKRRTCMQDGCSFVGTYKELRKHV 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,498,577
Number of Sequences: 37544
Number of extensions: 282658
Number of successful extensions: 902
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)