Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30204
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)                   99   4e-21
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   33   0.26 
SB_526| Best HMM Match : GRP (HMM E-Value=8.5)                         31   1.1  
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   31   1.1  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           28   7.5  
SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)                  28   7.5  

>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
          Length = 327

 Score = 99.1 bits (236), Expect = 4e-21
 Identities = 44/67 (65%), Positives = 54/67 (80%)
 Frame = +3

Query: 72  KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTA 251
           K TIGK++KM  HINYR+R  LQD R FIGTF AFDKHMN+ILGDC+EFRKIK K+SK  
Sbjct: 23  KPTIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQ 82

Query: 252 DEKKKEL 272
           + ++K +
Sbjct: 83  EREEKRV 89



 Score = 37.9 bits (84), Expect = 0.009
 Identities = 16/22 (72%), Positives = 20/22 (90%)
 Frame = +2

Query: 254 REEKRTLGFVLLRGENIVSLTI 319
           REEKR LG VLLRGE++VS+T+
Sbjct: 84  REEKRVLGLVLLRGEHLVSMTV 105


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +3

Query: 87  KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
           +  +++  +N  +RV + D RT IG+F   DK  N+ILG C+EF
Sbjct: 29  QRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEF 72


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
           ++ R+ V +++ R   G   A+D+H+N+IL D EE
Sbjct: 24  LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEE 58


>SB_526| Best HMM Match : GRP (HMM E-Value=8.5)
          Length = 149

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 540 HDGWPSSRNDGSSSWHGSWWART-GSSRNAT 629
           +DGW ++  DG ++ +G  W  T G+ RNAT
Sbjct: 85  YDGWNATNGDGWNATNGDGWNGTNGNGRNAT 115


>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +3

Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKK 266
           N +V +  +++R  +   KAFD+H N++L   E  +++ ++  K+   KKK
Sbjct: 29  NTQVLINCRNNRKLLARVKAFDRHCNMVL---ENVKEMWTETPKSGKGKKK 76


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +3

Query: 51  YLPNHSDKMTIGKNNKMQQHINY--RVRVILQDSR 149
           ++P H+  M IGK  +M + I +  RVR I+  SR
Sbjct: 334 FIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKSR 368


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +3

Query: 87  KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK- 263
           ++ +M +H  YR  + L+DS  F    +      NL L  CE  + +++ + +    KK 
Sbjct: 485 RHQRMMRHNQYRELLGLRDSLDFSSNMEDSHATQNLRLSTCELTKSLRNFSKELPFIKKG 544

Query: 264 -KELWV-LFFY 290
             E  + LFFY
Sbjct: 545 HAETQINLFFY 555


>SB_23574| Best HMM Match : efhand (HMM E-Value=2e-05)
          Length = 69

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 153 FIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKELWVLF 284
           F+  FK FD++ N ++G  E    + S   K +DE+   L V F
Sbjct: 7   FMECFKVFDRNGNGLIGAAELRHLLASLGDKLSDEEVDNLMVGF 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,553,484
Number of Sequences: 59808
Number of extensions: 349508
Number of successful extensions: 725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)