Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30204
(785 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 105 2e-22
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 105 2e-22
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 105 2e-22
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 105 2e-22
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 105 2e-22
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 105 2e-22
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 105 2e-22
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 105 2e-22
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 105 2e-22
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 105 2e-22
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 105 2e-22
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 103 6e-22
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 102 2e-21
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 102 2e-21
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 102 2e-21
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 102 2e-21
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 102 2e-21
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 102 2e-21
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 102 2e-21
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 102 2e-21
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 102 2e-21
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 100 5e-21
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 95 3e-19
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 95 3e-19
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 87 7e-17
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 87 7e-17
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 69 1e-11
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 39 0.018
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.018
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.018
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 39 0.018
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 39 0.018
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 38 0.041
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 38 0.041
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 38 0.041
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 38 0.041
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 38 0.041
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 36 0.22
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 36 0.22
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 36 0.22
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 36 0.22
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 36 0.22
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 33 1.5
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 33 1.5
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 33 1.5
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 31 3.6
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 31 3.6
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 31 3.6
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 31 3.6
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 4.7
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 4.7
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 4.7
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 4.7
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 4.7
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 4.7
X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein wit... 30 8.2
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 39.9 bits (89), Expect = 0.010
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI 319
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 105 bits (252), Expect = 2e-22
Identities = 47/66 (71%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 39.9 bits (89), Expect = 0.010
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI 319
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTV 82
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 103 bits (248), Expect = 6e-22
Identities = 46/66 (69%), Positives = 57/66 (86%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNS+ A+
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 102 bits (244), Expect = 2e-21
Identities = 45/66 (68%), Positives = 56/66 (84%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 100 bits (240), Expect = 5e-21
Identities = 45/66 (68%), Positives = 55/66 (83%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC EFRKIK KN+K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 255 EKKKEL 272
++K +
Sbjct: 61 REEKRV 66
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 61 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 120
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 121 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 148
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 95.1 bits (226), Expect = 3e-19
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+ ++K +
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 59
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 54 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 113
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 114 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 141
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 95.1 bits (226), Expect = 3e-19
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KNSK A+ ++K +
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRV 59
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 54 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPM 113
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 114 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 141
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 87.0 bits (206), Expect = 7e-17
Identities = 38/66 (57%), Positives = 52/66 (78%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 255 EKKKEL 272
++K +
Sbjct: 101 REEKRV 106
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 87.0 bits (206), Expect = 7e-17
Identities = 38/66 (57%), Positives = 52/66 (78%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN+K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 255 EKKKEL 272
++K +
Sbjct: 101 REEKRV 106
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 69.3 bits (162), Expect = 1e-11
Identities = 30/44 (68%), Positives = 36/44 (81%)
Frame = +3
Query: 141 DSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
D R FIGTFKAFDKHMNLIL DC+EFRKIK KN+K + ++K +
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRV 44
Score = 41.5 bits (93), Expect = 0.003
Identities = 30/88 (34%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Frame = +2
Query: 254 REEKRTLGFVLLRGENIVSLTI----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 421
REEKR LG VLLRGEN+VS+T+
Sbjct: 39 REEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARVPLAGAAGGPGVGRAAGRGVPAGVPI 98
Query: 422 XXXXXXXXXXXRGVGGPSQQHMAPGNRG 505
RGVGGPSQQ M P RG
Sbjct: 99 PQAPAGLAGPVRGVGGPSQQVMTPQGRG 126
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.1 bits (87), Expect = 0.018
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.018
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.018
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.018
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.018
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.041
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E +
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEPR 97
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.041
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E +
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEPR 97
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 37.9 bits (84), Expect = 0.041
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E +
Sbjct: 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEPR 145
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.041
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E +
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEPR 97
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 37.9 bits (84), Expect = 0.041
Identities = 18/56 (32%), Positives = 33/56 (58%)
Frame = +3
Query: 96 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
+++ +N +R+ + D RT +G F D+ N+ILG +EF +K +S +A E +
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSAGEPR 97
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.22
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.22
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.22
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.22
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.22
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 32.7 bits (71), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
I R+ ++++ + +GT FD +N++L D EF
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF 57
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 32.7 bits (71), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
I R+ ++++ + +GT FD +N++L D EF
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF 57
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 32.7 bits (71), Expect = 1.5
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
I R+ ++++ + +GT FD +N++L D EF
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF 57
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
N +V + ++++ +G KAFD+H N++L + +E K+ K + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
N +V + ++++ +G KAFD+H N++L + +E K+ K + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
N +V + ++++ +G KAFD+H N++L + +E K+ K + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 31.5 bits (68), Expect = 3.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKK 263
N +V + ++++ +G KAFD+H N++L + +E K+ K + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 209
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 209
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 209
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 209
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 209
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 4.7
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 209
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>X58233-1|CAA41191.1| 50|Homo sapiens 36/8-3 fusion protein with
epitope for anti-lectin antibody protein.
Length = 50
Score = 30.3 bits (65), Expect = 8.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 516 SSSNARRPHDGWPSSRNDGSSSWHGSW 596
SS+ A RPH GW S + G S+ W
Sbjct: 8 SSAPAVRPHQGWSQSSHRGDSAHQSPW 34
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,875,618
Number of Sequences: 237096
Number of extensions: 1673599
Number of successful extensions: 3795
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 3576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3795
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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