Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30204
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical pr...    97   2e-20
Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical pr...    37   0.019
AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical ...    36   0.033
Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical pr...    34   0.10 
AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like ...    34   0.13 
U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.40 
Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical pr...    31   0.71 

>Z92773-2|CAB07132.1|  160|Caenorhabditis elegans Hypothetical
           protein W08E3.1 protein.
          Length = 160

 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 41/66 (62%), Positives = 52/66 (78%)
 Frame = +3

Query: 75  MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
           MTI KNNKM  H+NYR+++ILQD RTFIG FKAFDKHMN++L +CEE R+IK K  K  D
Sbjct: 1   MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTD 60

Query: 255 EKKKEL 272
            ++K +
Sbjct: 61  GEEKRI 66



 Score = 35.1 bits (77), Expect = 0.057
 Identities = 15/21 (71%), Positives = 19/21 (90%)
 Frame = +2

Query: 257 EEKRTLGFVLLRGENIVSLTI 319
           EEKR LG VL+RGE+IVS+T+
Sbjct: 62  EEKRILGLVLVRGEHIVSMTV 82


>Z69385-6|CAA93428.1|  104|Caenorhabditis elegans Hypothetical
           protein ZK593.7 protein.
          Length = 104

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = +3

Query: 99  MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKK 266
           + + ++  +RV  Q  R   G  + FD+ +N++L DC E+ +     S   DE ++
Sbjct: 16  LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQ 71


>AL132865-8|CAB60606.2|  102|Caenorhabditis elegans Hypothetical
           protein Y62E10A.12 protein.
          Length = 102

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +3

Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKE 269
           ++ RV V +++ R   G  +AFD+H+N++L + EE    +  +  T +E  K+
Sbjct: 25  LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQ 77


>Z78012-3|CAB01413.1|  118|Caenorhabditis elegans Hypothetical
           protein C52E4.3 protein.
          Length = 118

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 16/51 (31%), Positives = 32/51 (62%)
 Frame = +3

Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKK 266
           N++V +  ++++  +G  KAFD+H N++L   E  +++ ++  KT   KKK
Sbjct: 39  NHQVLINCRNNKKLLGRVKAFDRHCNMVL---ENVKEMWTEVPKTGKGKKK 86


>AC084197-12|AAL00875.1|   98|Caenorhabditis elegans Lsm sm-like
           protein protein 8 protein.
          Length = 98

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 99  MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
           +  ++N  V V+  D R  +G  K FD+ +NL++ D  E
Sbjct: 5   LDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE 43


>U42436-7|AAO61428.2|  223|Caenorhabditis elegans Hypothetical
           protein C49H3.4 protein.
          Length = 223

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 102 QQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKELWVL 281
           Q+ I  RVR  ++  R F G    FD+H NL++ D  E   +  + ++     +KE+ +L
Sbjct: 120 QKRIEVRVRSAIRIDRIFEGIPTTFDEHFNLMMKDVTE-TVLHGRKAQKEFTNRKEMQLL 178


>Z81071-3|CAB03013.1|   91|Caenorhabditis elegans Hypothetical
           protein F28F8.3 protein.
          Length = 91

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +3

Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 218
           I  ++ VI+++ +  +GT   FD ++N++L D  E+
Sbjct: 22  IGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEY 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,438
Number of Sequences: 27780
Number of extensions: 267258
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)