Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30204
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          26   0.46 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   5.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.8  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 516 SSSNARRPHDGWPSSRNDGSSSW 584
           S  N  R H G  SS + GS SW
Sbjct: 389 SGENNSRGHSGQSSSHHHGSKSW 411


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -2

Query: 775 LDSLSRQHVHHSTNFMFHTQNQRIILNF*YSTVFNNINHKSLH 647
           + SLS + +H++ N+ ++  N     N  Y+  +NN N K L+
Sbjct: 315 ISSLSNKTIHNNNNYKYNYNNNNYNNNN-YNNNYNN-NCKKLY 355


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 775 LDSLSRQHVHHSTNFMFHTQNQRIILNF*YSTVFNNINH 659
           + SLS + +H++ N+ ++  N     N     ++ NIN+
Sbjct: 82  ISSLSNRTIHNNNNYKYNYNNNNYNNN--CKKLYYNINY 118


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 775 LDSLSRQHVHHSTNFMFHTQNQRIILNF*YSTVFNNINH 659
           + SLS + +H++ N+ ++  N     N     ++ NIN+
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNNNYNNN--CKKLYYNINY 118


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 775 LDSLSRQHVHHSTNFMFHTQNQRIILNF*YSTVFNNINH 659
           + SLS + +H++ N+ ++  N     N     ++ NIN+
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNNNYNNN--CKKLYYNINY 118


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = -2

Query: 775 LDSLSRQHVHHSTNFMFHTQNQRIILNF*YSTVFNNINH 659
           + SLS + +H++ N+ ++  N     N     ++ NIN+
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNNNYNNN--CKKLYYNINY 118


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +3

Query: 222 KIKSKNSKTADEKKKELWVL 281
           +I+S NSK  ++KK+E +++
Sbjct: 79  EIESDNSKEVNDKKEENFIV 98


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/22 (27%), Positives = 15/22 (68%)
 Frame = -2

Query: 775 LDSLSRQHVHHSTNFMFHTQNQ 710
           + SLS + +H++ N+ ++  N+
Sbjct: 82  ISSLSNKTIHNNNNYKYNYNNK 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,970
Number of Sequences: 438
Number of extensions: 3128
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)