Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30204
(785 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 84 9e-17
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 83 2e-16
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 83 2e-16
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 38 0.010
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 37 0.013
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 36 0.023
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 35 0.053
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 35 0.053
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 35 0.053
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 35 0.053
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 33 0.21
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 33 0.21
At1g73150.1 68414.m08460 DNA-binding bromodomain-containing prot... 32 0.38
At1g77770.2 68414.m09056 expressed protein 31 0.66
At1g77770.1 68414.m09055 expressed protein 31 0.66
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 31 0.87
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 30 1.5
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 29 2.6
At3g62370.1 68416.m07006 expressed protein 29 4.6
At1g68140.1 68414.m07783 expressed protein 29 4.6
At3g60920.1 68416.m06815 beige/BEACH domain-containing protein c... 28 6.1
At2g27900.1 68415.m03382 expressed protein 28 6.1
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 28 8.1
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 84.2 bits (199), Expect = 9e-17
Identities = 37/66 (56%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNSKTA 251
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ +K +K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 252 DEKKKE 269
+E+++E
Sbjct: 61 NEEREE 66
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/25 (64%), Positives = 21/25 (84%)
Frame = +2
Query: 245 NCRREEKRTLGFVLLRGENIVSLTI 319
N REE+RTLG VLLRGE ++S+T+
Sbjct: 61 NEEREERRTLGLVLLRGEEVISMTV 85
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 83.0 bits (196), Expect = 2e-16
Identities = 34/65 (52%), Positives = 49/65 (75%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K +
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 255 EKKKE 269
E++++
Sbjct: 61 EERED 65
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 245 NCRREEKRTLGFVLLRGENIVSLTI 319
N RE++RTLG VLLRGE ++S+T+
Sbjct: 60 NEEREDRRTLGLVLLRGEEVISMTV 84
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 83.0 bits (196), Expect = 2e-16
Identities = 34/65 (52%), Positives = 49/65 (75%)
Frame = +3
Query: 75 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTAD 254
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ K +
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 255 EKKKE 269
E++++
Sbjct: 61 EERED 65
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +2
Query: 245 NCRREEKRTLGFVLLRGENIVSLTI 319
N RE++RTLG VLLRGE ++S+T+
Sbjct: 60 NEEREDRRTLGLVLLRGEEVISMTV 84
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
I R+ V L+ R G AFD+H+N+ILGD EE
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
++ R+ V L+ R G AFD+H+N+ILGD EE
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/56 (26%), Positives = 33/56 (58%)
Frame = +3
Query: 93 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEK 260
+++++ + ++ V ++D R F+G F DK N+IL D E+R I+ + +++
Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQR 80
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
N +V + +++R +G +AFD+H N++L E R++ ++ KT KKK L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
N +V + +++R +G +AFD+H N++L E R++ ++ KT KKK L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
N +V + +++R +G +AFD+H N++L E R++ ++ KT KKK L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/53 (33%), Positives = 32/53 (60%)
Frame = +3
Query: 114 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADEKKKEL 272
N +V + +++R +G +AFD+H N++L E R++ ++ KT KKK L
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 83
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCE 212
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 90 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCE 212
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At1g73150.1 68414.m08460 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 461
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/42 (42%), Positives = 23/42 (54%)
Frame = +3
Query: 468 GHLNNTWHQEIVVNFCSSSNARRPHDGWPSSRNDGSSSWHGS 593
GH+ +T QE+ V SSSN+ G SS +D SS H S
Sbjct: 416 GHVASTVRQEVNVGGSSSSNSSSSGSGSGSSGSDSDSSGHES 457
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 78 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 188
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 78 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 188
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 31.1 bits (67), Expect = 0.87
Identities = 11/44 (25%), Positives = 29/44 (65%)
Frame = +3
Query: 84 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
G+ ++++++ ++++ L +R +GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE 48
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 123 VRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
+ VI D R +G K FD+ N+IL + E
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHE 45
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +3
Query: 84 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 215
G+ ++++++ ++++ L +R GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48
>At3g62370.1 68416.m07006 expressed protein
Length = 361
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Frame = +3
Query: 543 DGWPSSRNDGSSS--WHGSWW 599
DG S ND S+ WHG+WW
Sbjct: 200 DGLGPSGNDSSAQNDWHGAWW 220
>At1g68140.1 68414.m07783 expressed protein
Length = 334
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 111 INYRVRVILQDSRTFIGTFKAFDKHMNL 194
+N + R+ +Q++ + GTFK KHM +
Sbjct: 140 LNLKKRICMQENCVYAGTFKELRKHMKV 167
>At3g60920.1 68416.m06815 beige/BEACH domain-containing protein
contains Pfam PF02138: Beige/BEACH domain; similar to LBA
isoform gamma (GI:10257405) [Mus musculus]; similar to
beige-like protein (CDC4L) - Homo sapiens; similar to
Neurobeachin: kinase A-anchoring, beige/Chediak-higashi
protein homolog implicated in neuronal membrane traffic
(AKAP550) (GI:11863541) [Drosophila melanogaster].
Length = 1928
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 9/81 (11%)
Frame = +3
Query: 66 SDKMTIGKNNKMQQHINYRVRVILQDSRTFI-------GTFKAFDKHMNLILGDCEEFRK 224
S++ + + +++ + R++L+ S T + GTF+ + +N I+ D E +
Sbjct: 1515 SEQNMVQNSTEVKDLSELKERIVLEISSTMVRPLGVVKGTFQITTRRINFIV-DIREDQH 1573
Query: 225 I--KSKNSKTADEKKKELWVL 281
+ KS SK+ DE++ W++
Sbjct: 1574 LDEKSDGSKSRDEERDRSWLM 1594
>At2g27900.1 68415.m03382 expressed protein
Length = 1124
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 498 IVVNFCSSSNARRPHDGWPSSRNDGSSSWHG-SWWARTGSSRNATL 632
I+ + +S ++R PH PS+ D S + G S+W ++G+ +A L
Sbjct: 633 IISSRSASGSSRFPHSDKPSNSIDPSGNRSGFSYWLKSGNPFSAKL 678
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 27.9 bits (59), Expect = 8.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 99 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSK 245
+Q ++ + Q G FD++MNL+L + EE IK K K
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIKKKTRK 68
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,814,142
Number of Sequences: 28952
Number of extensions: 242380
Number of successful extensions: 693
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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