Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30203
         (657 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    27   0.14 
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    27   0.14 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   2.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   6.7  

>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 181 LARNPAMLQELMRSHD--RALSNLESIQVVTMRSKE 282
           LA   +M+    RS+D    LSNLESIQ+ +++ KE
Sbjct: 119 LAMLTSMVMFYKRSNDLKTLLSNLESIQIYSIKPKE 154


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +1

Query: 181 LARNPAMLQELMRSHD--RALSNLESIQVVTMRSKE 282
           LA   +M+    RS+D    LSNLESIQ+ +++ KE
Sbjct: 75  LAMLTSMVMFYKRSNDLKTLLSNLESIQIYSIKPKE 110


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 69  SGSFIICCTNGLSKTCLSISGLD 1
           +GS ++C +NGL  T  S S L+
Sbjct: 49  AGSNLLCASNGLVTTLASGSSLN 71


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 26  VLDNPLVQQMMNDPENMRT 82
           +L  P +  ++NDP+N +T
Sbjct: 335 LLSYPEICTLLNDPQNAKT 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,749
Number of Sequences: 336
Number of extensions: 3407
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)