Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30203
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    29   0.78 
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    28   1.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.4  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    27   3.1  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   3.1  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    26   4.2  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    26   5.5  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   7.3  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    25   7.3  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   7.3  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    25   9.6  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.6  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 506 QTPGMQSLLQQMSENPRLVQSMVSSPYTNSMLQGLNA 616
           Q P MQ++L Q  ENP  +   + +P   S ++ L A
Sbjct: 548 QDPAMQAILGQARENPAALMEHMKNPTVKSKIEKLIA 584



 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/38 (21%), Positives = 22/38 (57%)
 Frame = +1

Query: 91  SNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAML 204
           S+P+  + ++ NPE + +L +   + +  ++ +NP  +
Sbjct: 138 SDPKFMEKLASNPETASLLADSAFMAKLQKIQQNPGSI 175


>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 157

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 240 QSRKYPGGYNALQRMYRDIQEPMLNVASSMAGNPFSGLVDN 362
           Q + +PGGY  L+ +  D+ EP   V SS+     + LV N
Sbjct: 29  QKKFHPGGYQKLEELAFDL-EPYFQVVSSIPLEKHTFLVTN 68


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 17  LRQVLDNPLVQQMMNDPENMRTSS 88
           L++  D+ L+QQ+++DPE ++T S
Sbjct: 662 LKEGQDDSLIQQIISDPETVKTLS 685


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 68  ENMRTSSPPTHKCKISCLEIQKS 136
           ++M TS  P H  +ISCL I K+
Sbjct: 164 DHMNTSIVPAHDSEISCLGISKT 186


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 295 MSLYILWSAL*PPGYFRDWRGRGRVSAS 212
           +S ++ W AL PPGY ++W    RV +S
Sbjct: 129 ISEFLRW-ALMPPGYVKEWHVGVRVKSS 155


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 130 EISHMLNNPELLRQTMELARNPAMLQELMRS 222
           E+++ML+NP +     E+  NP ML  ++ S
Sbjct: 143 ELANMLSNPMVQSSINEMFSNPQMLDMIINS 173


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = -1

Query: 129 WISR-HEILHLWVGGDEV 79
           WIS  H +LH+W  G+E+
Sbjct: 619 WISEAHTLLHIWYNGNEL 636


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +1

Query: 79  YLITSNPQMQDLMSRNPEISHMLNNPELLRQTME--LARNPAMLQELMRSHDRALSNLES 252
           Y+  S P+++DL+ +N      +NN    R+  E  LAR    L + + S+ +   NLE+
Sbjct: 8   YMEQSVPELEDLLEKNIFNRDEINNIIKTRRVFEEKLARRQVKLNDFL-SYIQYEINLET 66

Query: 253 IQ 258
           ++
Sbjct: 67  LR 68


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 503 HQTPGMQSLLQQMSENPRLV 562
           H +P + +LLQ +++NPR+V
Sbjct: 448 HLSPMVSALLQGLTDNPRIV 467


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/33 (24%), Positives = 21/33 (63%)
 Frame = -1

Query: 126 ISRHEILHLWVGGDEVRIFSGSFIICCTNGLSK 28
           ++ +++LH     + ++ + G FIIC ++G+ +
Sbjct: 396 MTTNDVLHTLQALNMLKYYKGQFIICISDGIEQ 428


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 500 PHQTPGMQSLLQQMSENPRLVQSMVSS--PYTNSMLQG 607
           PH  PG    +   S++ RL +  VSS  P+T+   +G
Sbjct: 247 PHSLPGFNVNITTNSKDTRLARFFVSSLIPFTDGNKEG 284


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 103 MQDLMSRNPEISHMLNNPELLRQTMELARNP---AMLQELM--RSHDRALSNLESI 255
           +Q L+  NP+++  L  PE+ +  ++L  +P    M Q+L    S ++ LS L  I
Sbjct: 480 LQKLLDENPKVNASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASREQKLSMLNGI 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,761
Number of Sequences: 5004
Number of extensions: 52954
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)