Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30203
(657 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0799 - 20650799-20650947,20651022-20651114,20651906-206519... 82 3e-16
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 81 8e-16
03_04_0031 - 16642947-16643864 31 1.1
01_05_0048 - 17561963-17563585 31 1.1
12_01_0924 + 9161155-9161646,9161748-9162164,9162250-9162313,916... 29 3.3
09_02_0347 + 7604466-7604622,7604809-7605146 29 3.3
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 29 3.3
07_01_0510 - 3794793-3795047,3796005-3796295,3796850-3796906,379... 28 7.5
02_04_0612 + 24370446-24373044,24373135-24373541 28 7.5
11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,361... 27 9.9
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 27 9.9
07_01_1004 + 8500584-8501881,8502194-8502402,8503024-8503266,850... 27 9.9
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 27 9.9
>10_08_0799 -
20650799-20650947,20651022-20651114,20651906-20651934,
20652039-20652097,20652170-20652283,20652374-20652534,
20652544-20652663,20652741-20653469,20654980-20655244
Length = 572
Score = 82.2 bits (194), Expect = 3e-16
Identities = 32/57 (56%), Positives = 51/57 (89%)
Frame = +1
Query: 82 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLES 252
+I +NPQM+D++ RNP+++H+LN+P +LRQT+E ARNP +++E+MR+ DRA+SN+ES
Sbjct: 194 MIMNNPQMRDIIDRNPDLAHVLNDPSVLRQTLEAARNPEIMREMMRNTDRAMSNIES 250
Score = 47.2 bits (107), Expect = 1e-05
Identities = 34/78 (43%), Positives = 40/78 (51%), Gaps = 22/78 (28%)
Frame = +3
Query: 255 PGGYNALQRMYRDIQEPMLNVASSMAG------NPFSGLVDN-------SDGTN-PQQGS 392
P G+N L+RMY +QEP LN A++M G NPFS L+ N TN P GS
Sbjct: 252 PEGFNMLRRMYETVQEPFLN-ATTMGGEGNTAPNPFSALLGNQGSNQPRDPATNAPNTGS 310
Query: 393 E--------NRQPLPNPW 422
E N PLPNPW
Sbjct: 311 ESTTGTPAPNTNPLPNPW 328
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +1
Query: 82 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNL 246
L+ NP ++LM N ++ M NPE +RQ +P +Q+L+ LS L
Sbjct: 426 LLNFNPNTRNLMESNTQLREMFQNPEFIRQ----LTSPETMQQLLSFQQTLLSQL 476
Score = 32.3 bits (70), Expect = 0.35
Identities = 9/25 (36%), Positives = 22/25 (88%)
Frame = +2
Query: 5 NPDMLRQVLDNPLVQQMMNDPENMR 79
NP+++R++++ P++Q +MN+P+ +R
Sbjct: 168 NPNLMREIMNMPMMQNLMNNPDLIR 192
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +1
Query: 85 ITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRA 234
++ NP + + P + +++NNP+L+R + NP M + R+ D A
Sbjct: 165 LSQNPNLMREIMNMPMMQNLMNNPDLIRNM--IMNNPQMRDIIDRNPDLA 212
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = +2
Query: 512 PGMQSLLQQMSENPRLVQSMVSSPYTNSMLQGLNA*PEMAS*LINQDP 655
P + + QQ+S+NP L++ +++ P M+Q L P++ +I +P
Sbjct: 156 PELDQMQQQLSQNPNLMREIMNMP----MMQNLMNNPDLIRNMIMNNP 199
>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 81.0 bits (191), Expect = 8e-16
Identities = 31/57 (54%), Positives = 51/57 (89%)
Frame = +1
Query: 82 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLES 252
+I +NPQM++++ RNP+++H+LN+P +LRQT+E ARNP +++E+MR+ DRA+SN+ES
Sbjct: 895 IIMNNPQMREIVDRNPDLAHVLNDPSILRQTVEAARNPELMREMMRNTDRAMSNIES 951
Score = 44.4 bits (100), Expect = 8e-05
Identities = 32/78 (41%), Positives = 39/78 (50%), Gaps = 22/78 (28%)
Frame = +3
Query: 255 PGGYNALQRMYRDIQEPMLNVASSMAG------NPFSGLVDNSD--------GTNPQQGS 392
P G+N L+RMY +QEP LN A++MAG NPFS L+ N +P S
Sbjct: 953 PEGFNMLRRMYETVQEPFLN-ATTMAGEGDRSSNPFSALLGNHGSNQARDPAANSPTTTS 1011
Query: 393 E--------NRQPLPNPW 422
E N PLPNPW
Sbjct: 1012 ESTTGSPAPNTNPLPNPW 1029
Score = 36.3 bits (80), Expect = 0.021
Identities = 24/92 (26%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 82 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLESIQV 261
L+ NP ++++M N ++ M NPE +RQ +P LQ+L+ +S L Q
Sbjct: 1103 LLNINPNVRNMMESNTQLREMFQNPEFVRQ----LTSPETLQQLISFQQSLMSQLGQQQA 1158
Query: 262 VTMRSKECIGT-YRNRCSMWPVAWQGTLSLDS 354
R++ G Y N + G +L++
Sbjct: 1159 GPERTQSGAGAEYFNGTTYESTLMPGNTNLNN 1190
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/25 (36%), Positives = 20/25 (80%)
Frame = +2
Query: 5 NPDMLRQVLDNPLVQQMMNDPENMR 79
NP ++R++++ PL+Q ++N P+ +R
Sbjct: 869 NPTLMREIMNMPLMQNILNSPDLIR 893
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 512 PGMQSLLQQMSENPRLVQSMVSSPYTNSML 601
P + + QQ+SENP L++ +++ P ++L
Sbjct: 857 PELSQMQQQLSENPTLMREIMNMPLMQNIL 886
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 85 ITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRA 234
++ NP + + P + ++LN+P+L+R + NP M + + R+ D A
Sbjct: 866 LSENPTLMREIMNMPLMQNILNSPDLIRNI--IMNNPQMREIVDRNPDLA 913
>03_04_0031 - 16642947-16643864
Length = 305
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 180 VGSQPRYVARVDALTRPRPLQSRKYPGGYNALQRMYRDIQEPMLNVAS 323
V ++P VARV L P Q R GG + ++ + ++E + NVA+
Sbjct: 174 VRTKPYVVARVQPLADAPPSQERGGDGGGDMVRHLVERVEEQLKNVAA 221
>01_05_0048 - 17561963-17563585
Length = 540
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 237 LQSRKYPGGYNALQRMYRDIQEPMLNVASSMAG 335
++S K YN QRM RD EP LN + M G
Sbjct: 410 IKSEKIEEAYNLFQRMERDGCEPELNTYTMMVG 442
>12_01_0924 +
9161155-9161646,9161748-9162164,9162250-9162313,
9162621-9163030
Length = 460
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 228 PRPLQSRKYPGGYNALQRMYRDIQEPMLNVASSMAGNPFSGLVDNSD 368
P PL S ++ LQ M RD+++P N SM F LV +S+
Sbjct: 37 PSPLGSEMVDVDHDLLQDMLRDVEDPAYNKRDSM---KFRRLVSDSE 80
>09_02_0347 + 7604466-7604622,7604809-7605146
Length = 164
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +3
Query: 228 PRPLQSRKYPGGYNALQRMYRDIQEPMLNVASSMAGNPFSGLVDNSD 368
P PL + LQ M RD+++P N SM FS LV +S+
Sbjct: 118 PSPLDGEMIDVDLDLLQDMLRDVEDPSYNEKDSM---KFSRLVSDSE 161
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 108 LHLWVGGDEVRIFSGSFIICCT--NGLSK 28
LHLW+G ++ + + + CCT NGL K
Sbjct: 139 LHLWLGNKWAKMANSTHLTCCTLVNGLVK 167
>07_01_0510 -
3794793-3795047,3796005-3796295,3796850-3796906,
3797021-3797055,3797132-3797172,3798020-3798519
Length = 392
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = +2
Query: 17 LRQVLDNPLVQQMMNDPENMRTSSPPTHKCKISCLEIQKSVI 142
+RQ++++P V+ + D ENM +H C + + ++S++
Sbjct: 157 VRQLMEHPAVKSPLPDLENMVILETGSHACPVIEAKFEESLL 198
>02_04_0612 + 24370446-24373044,24373135-24373541
Length = 1001
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 8 PDMLRQVLDNPLVQQMMNDPENMRTSSPPTHKCKISCLEIQKS 136
P + QV+D L ++ M+ + T H+C IS L++ S
Sbjct: 916 PHQIFQVIDARLAEKSMDSNQTNMTLENAVHQCLISLLQLALS 958
>11_01_0466 + 3607947-3610608,3610725-3611018,3611494-3611895,
3611984-3612217,3614113-3614138,3614446-3614633,
3615707-3617670,3617938-3618423,3618527-3618894
Length = 2207
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 8 PDMLRQVLDNPLVQQM-MNDPENMRTSSPPTHKCKISCLEI 127
PD + Q++D LVQ++ ++ + +R TH C +S L I
Sbjct: 937 PDKMLQIVDPQLVQELGLSQEDPVRVDETATH-CLLSVLNI 976
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/62 (24%), Positives = 21/62 (33%)
Frame = +3
Query: 228 PRPLQSRKYPGGYNALQRMYRDIQEPMLNVASSMAGNPFSGLVDNSDGTNPQQGSENRQP 407
P R Y G +A +R Y D+Q + S + N+ G P P
Sbjct: 422 PSEENKRNYGNGEDAQERYYDDVQNMDGKIPSDSHTGRGGAIASNNSGAGPSGSGSIISP 481
Query: 408 LP 413
P
Sbjct: 482 TP 483
>07_01_1004 +
8500584-8501881,8502194-8502402,8503024-8503266,
8503381-8503697,8503891-8504250
Length = 808
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 8 PDMLRQVLDNPLVQQM-MNDPENMRTSSPPTHKCKISCLEI 127
PD L Q++D LVQ++ +N + + T H C +S L I
Sbjct: 633 PDRLLQIVDPQLVQELSLNQEDPVATDENAAH-CLLSVLNI 672
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +1
Query: 82 LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLES 252
L + + +DL+ RN ++ + N +L+++ E ++ LQE ++ + +NLE+
Sbjct: 1799 LTEARERNEDLLKRNEDL--LKRNDDLIKKIEESSKTITQLQETLQRLEGKSTNLEA 1853
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,683,534
Number of Sequences: 37544
Number of extensions: 398880
Number of successful extensions: 1206
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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