Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30203
(657 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4) 46 4e-05
SB_57465| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_29138| Best HMM Match : Albicidin_res (HMM E-Value=0.26) 30 1.4
SB_59648| Best HMM Match : Albicidin_res (HMM E-Value=0.63) 30 1.9
SB_55663| Best HMM Match : Albicidin_res (HMM E-Value=0.53) 30 1.9
SB_20924| Best HMM Match : Albicidin_res (HMM E-Value=0.64) 30 1.9
SB_1931| Best HMM Match : Albicidin_res (HMM E-Value=0.23) 30 1.9
SB_35813| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_20341| Best HMM Match : Albicidin_res (HMM E-Value=0.53) 30 1.9
SB_18224| Best HMM Match : Maf (HMM E-Value=6.8) 30 1.9
SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_13328| Best HMM Match : Albicidin_res (HMM E-Value=0.23) 30 1.9
SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08) 30 1.9
SB_55960| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 29 2.5
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 29 3.3
SB_24502| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_46465| Best HMM Match : Albicidin_res (HMM E-Value=0.19) 29 4.4
SB_32919| Best HMM Match : Albicidin_res (HMM E-Value=0.19) 29 4.4
SB_11990| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7) 28 5.8
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_34312| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098) 28 7.7
SB_39734| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_7097| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_9834| Best HMM Match : CXCXC (HMM E-Value=4.4)
Length = 247
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = +3
Query: 255 PGGYNALQRMYRDIQEPMLNVASSMAGNPFSGLVDNSDGTNPQQGSENRQPL 410
PGG+NALQRMY DIQEPM+N A + + QQ N + L
Sbjct: 26 PGGFNALQRMYTDIQEPMMNAAQEQVSSRLPEFMAQMQNPAFQQSMANPRVL 77
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/25 (68%), Positives = 24/25 (96%)
Frame = +1
Query: 181 LARNPAMLQELMRSHDRALSNLESI 255
+ARNP+++QE+MR+ DRALSNLES+
Sbjct: 1 MARNPSVMQEMMRNQDRALSNLESL 25
>SB_57465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/39 (43%), Positives = 29/39 (74%)
Frame = +2
Query: 518 MQSLLQQMSENPRLVQSMVSSPYTNSMLQGLNA*PEMAS 634
MQ+L+QQMS NP+++Q M+ +PY M+Q + + P++ S
Sbjct: 1 MQNLMQQMSSNPQMLQQMMQAPYMQQMMQQMVSNPDLMS 39
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +2
Query: 2 SNPDMLRQVLDNPLVQQMM 58
SNP ML+Q++ P +QQMM
Sbjct: 10 SNPQMLQQMMQAPYMQQMM 28
>SB_29138| Best HMM Match : Albicidin_res (HMM E-Value=0.26)
Length = 172
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 62 AVAIVREKADKTVMDGDGHPNTLVEDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 115
>SB_59648| Best HMM Match : Albicidin_res (HMM E-Value=0.63)
Length = 139
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 26 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 79
>SB_55663| Best HMM Match : Albicidin_res (HMM E-Value=0.53)
Length = 198
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 88 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 141
>SB_20924| Best HMM Match : Albicidin_res (HMM E-Value=0.64)
Length = 136
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 26 AVAIVREKADKTVLDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 79
>SB_1931| Best HMM Match : Albicidin_res (HMM E-Value=0.23)
Length = 349
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y + + ++++TW+ L+R SCE++
Sbjct: 130 AVAIVREKADKTVLDGDGHPNTLVDDYEVMRHIPKLMSTWVTKYLKRPTSCEKV 183
>SB_35813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 393 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 446
>SB_20341| Best HMM Match : Albicidin_res (HMM E-Value=0.53)
Length = 173
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 70 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 123
>SB_18224| Best HMM Match : Maf (HMM E-Value=6.8)
Length = 603
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 181 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 234
>SB_16706| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 110 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 163
>SB_13328| Best HMM Match : Albicidin_res (HMM E-Value=0.23)
Length = 321
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y + + ++++TW+ L+R SCE++
Sbjct: 102 AVAIVREKADKTVLDGDGHPNTLVDDYEVMRHIPKLMSTWVTKYLKRPTSCEKV 155
>SB_3187| Best HMM Match : WD40 (HMM E-Value=2.2e-08)
Length = 1259
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 326 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 379
>SB_55960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++++TW+ L+R +CE++
Sbjct: 12 AVGIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLMSTWVTKYLKRPTNCEKV 65
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 29.5 bits (63), Expect = 2.5
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Frame = +1
Query: 100 QMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLES----IQVVT 267
+++ + ++ EIS L + Q E NP Q L+ + A+S++ S ++ T
Sbjct: 4388 ELKTIRAKAAEISDELTKAKTSLQEQEKVINPEFYQSLLVDTENAISDISSLVGQVEHQT 4447
Query: 268 MRSKEC---IGTYRNRCS 312
++ C IG +R+ C+
Sbjct: 4448 SETETCLDKIGQFRSACT 4465
>SB_3357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1228
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +3
Query: 336 NPFSGLVDNSDGTNPQQGSENRQPLPNP 419
NP SG DN TNPQ G+ + L NP
Sbjct: 1031 NPQSGAHDNVRLTNPQSGAHDNVRLTNP 1058
>SB_29906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2463
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 154 PELLRQTMELARNPAMLQELMRSHDRALSNLESIQVVTMRSKECIGTYRNR 306
P L ++TME R LQE+ S D + ++V + +K + T R
Sbjct: 1984 PMLEQETMERMRLEVQLQEIQESLDEIKKKKDQLEVELLEAKALVSTSARR 2034
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL--YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E + GH ++ + Y I + ++++TW+ L+R +CE++
Sbjct: 181 AVAIVREKATKTVMDGDGH-QNTLVDNYKVIRHIPKLMSTWVTKYLKRPTNCEKV 234
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +1
Query: 94 NPQM--QDLMSRNPEISH---MLNNPELLRQTMELARNPAMLQELMRSHDRALS 240
NP + Q ++ NP +S +L NP L +Q ++LA NPA+ Q++ +++ ALS
Sbjct: 45 NPALSQQVKLAYNPALSQHVKLLYNPALSQQ-VKLAYNPALSQQVKLAYNPALS 97
>SB_24502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +1
Query: 94 NPQM--QDLMSRNPEISH---MLNNPELLRQTMELARNPAMLQELMRSHDRALS 240
NP + Q ++ NP +S +L NP L +Q ++LA NPA+ Q++ +++ ALS
Sbjct: 39 NPALSQQVKLAYNPALSQHVKLLYNPALSQQ-VKLAYNPALSQQVKLAYNPALS 91
>SB_22290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 91 SNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQ 207
S+P M L+ +P+ L P+ + EL +NP LQ
Sbjct: 134 SSPNMYTLLQAHPKTRAYLQQPDYVAAIEELRKNPQALQ 172
>SB_46465| Best HMM Match : Albicidin_res (HMM E-Value=0.19)
Length = 240
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y + + ++++TW+ L+R +CE++
Sbjct: 130 AVAIVREKADKTVMDGDGHPNTLVDDYEVMRHIPKLMSTWVTKYLKRPTNCEKV 183
>SB_32919| Best HMM Match : Albicidin_res (HMM E-Value=0.19)
Length = 136
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y + + ++++TW+ L+R +CE++
Sbjct: 26 AVAIVREKADKTVMDGDGHPNTLVDDYEVMRHIPKLMSTWVTKYLKRPTNCEKV 79
>SB_11990| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y I + ++ +TW+ L+R +CE++
Sbjct: 23 AVAIVREKADKTVMDGDGHPNTLVDDYEVIRHIPKLKSTWVTKYLKRPTNCEKV 76
>SB_18837| Best HMM Match : Extensin_2 (HMM E-Value=1.7)
Length = 626
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 491 RSRP-HQTPGMQSLLQQMSENPRLVQSMVSSPYTNSML 601
RSRP H+ G+Q LLQ +Q+++ P T M+
Sbjct: 204 RSRPCHRGNGIQKLLQDPCHRGNGIQNLLQDPVTGGMV 241
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +2
Query: 65 PENMRTSSPPTHKCKISCLEIQKSVIC*TILNYYVKLWSWLATPLCCKS*CAHTTAPSPI 244
P ++ ++ P+ CK+ C ++ C I NY V + T C H P
Sbjct: 1093 PTSITPTTKPSSFCKLHCQTLRPDGTCTVISNYQVVNGMCVDTTFCKDKPNGHYADP--- 1149
Query: 245 SKVSRWLQC 271
SR+ QC
Sbjct: 1150 RDCSRFYQC 1158
>SB_34312| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 133 ISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLESIQVVTMRSKECIGTYRNRCS 312
++H N LL T + R P + Q R + ++ I V+ + K+ + Y+ R S
Sbjct: 12 VTHPSTNRALLSLTTVIGREPVLSQWYGRRRQNCVRSIYYITVLLVLRKQKVNAYQTRYS 71
>SB_52106| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0098)
Length = 1177
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 85 ITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRA 234
+ N QDL SRN E++ L ELLR+ + QE R ++A
Sbjct: 514 LRDNLSKQDL-SRNDEVAGFLKERELLRKELRRITEELSKQESARREEQA 562
>SB_39734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ GH Y + + ++++TW+ L+R +CE++
Sbjct: 91 AVVIVREKADKTVMDGDGHPNTLVDDYKVMRHIPKLMSTWVTKYLKRPTNCEKV 144
>SB_7097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 230
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = -2
Query: 371 AVRIVYESRERVPCHATGHIEHRFL-YVPIHSLERIVTTWILSRLERARSCERI 213
AV IV E ++ G++ Y + + ++++TW+ L+R +CE++
Sbjct: 120 AVAIVREKADKTVMDGDGNLNTLVDDYEVMRHIPKLMSTWVTKYLKRPTNCEKV 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,181,607
Number of Sequences: 59808
Number of extensions: 451399
Number of successful extensions: 1324
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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