Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30203
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.84 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     24   1.1  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   5.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.9  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -2

Query: 317 HIEHRFLYVPIHSLERI--VTTWILSRLERARSCERINSCNI 198
           H+ H  +   +  L  +  + TW+   L+     +RINSC++
Sbjct: 94  HVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLTQRINSCDL 135


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 497 RPHQTPGMQSLLQQMSENPRLVQSMVSSPYTNS 595
           RP  +P   S ++    NP L+QS  S  Y ++
Sbjct: 413 RPQVSPDRTSPMEYRLYNPALIQSQPSPQYPST 445


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 542 SENPRLVQSMVSSPYTNSMLQGLNA 616
           S NP  +Q+  +SP T S+   L+A
Sbjct: 21  SANPGTIQACTTSPATASLESSLSA 45


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 597 MELVYGEETIDWT 559
           MELVY   TID+T
Sbjct: 154 MELVYAWSTIDYT 166


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 154 PELLRQTMELARNPAMLQEL 213
           P+ +   MEL +NP  L+ +
Sbjct: 268 PDFINMLMELQKNPQKLENI 287


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 234 PLQSRKYPGGYNALQRMYRDIQE 302
           PL+ +  P G+ ++   Y++I+E
Sbjct: 399 PLELKGSPDGFESVTSQYKNIRE 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,783
Number of Sequences: 438
Number of extensions: 4070
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)