Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30203
         (657 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17200.1 68415.m01986 ubiquitin family protein weak similarit...    83   1e-16
At2g17190.1 68415.m01985 ubiquitin family protein contains INTER...    83   1e-16
At1g62740.1 68414.m07081 stress-inducible protein, putative simi...    30   1.2  
At1g69450.1 68414.m07980 early-responsive to dehydration protein...    29   2.1  
At1g33820.1 68414.m04185 hypothetical protein                          29   2.7  
At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    28   6.3  
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ...    27   8.3  

>At2g17200.1 68415.m01986 ubiquitin family protein weak similarity
           to PLIC-2 (ubiquitin-like type II) [Homo sapiens]
           GI:9937505; contains Pfam profiles PF00240: Ubiquitin
           family, PF00627: UBA/TS-N domain
          Length = 551

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 33/58 (56%), Positives = 51/58 (87%)
 Frame = +1

Query: 82  LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLESI 255
           +I +NPQM++L+ RNPE+ H+LN+P +LRQT+E ARNP +++E+MR+ DRA+SN+ES+
Sbjct: 193 MIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMMRNTDRAMSNIESM 250



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 22/78 (28%)
 Frame = +3

Query: 255 PGGYNALQRMYRDIQEPMLNVASSMAG--------NPFSGLVDN-------SDGTN---- 377
           P G+N L+RMY ++QEP++N A++M+G        NPF+ L+ N       SD +N    
Sbjct: 251 PEGFNMLRRMYENVQEPLMN-ATTMSGNAGNNTGSNPFAALLGNQGVTTQGSDASNNSST 309

Query: 378 PQQGS---ENRQPLPNPW 422
           P  G+    N  PLPNPW
Sbjct: 310 PNAGTGTIPNANPLPNPW 327



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +1

Query: 82  LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELM 216
           L++ NPQ++ ++  NP++  M+ NP+ LRQ      +P M+Q++M
Sbjct: 410 LMSLNPQLRSMLDSNPQLREMMQNPDFLRQ----FSSPEMMQQMM 450



 Score = 35.5 bits (78), Expect = 0.031
 Identities = 12/26 (46%), Positives = 21/26 (80%)
 Frame = +2

Query: 5   NPDMLRQVLDNPLVQQMMNDPENMRT 82
           NP+M+R +++ P +Q +MN+PE MR+
Sbjct: 167 NPNMIRDMMNTPAIQNLMNNPEFMRS 192



 Score = 33.1 bits (72), Expect = 0.17
 Identities = 12/37 (32%), Positives = 27/37 (72%)
 Frame = +1

Query: 82  LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARN 192
           ++ SNPQ++++M +NP+     ++PE+++Q M L ++
Sbjct: 420 MLDSNPQLREMM-QNPDFLRQFSSPEMMQQMMTLQQS 455



 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 85  ITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRS 222
           +  NP M   M   P I +++NNPE +R    +  NP M + + R+
Sbjct: 164 LAQNPNMIRDMMNTPAIQNLMNNPEFMRSM--IMNNPQMRELVDRN 207


>At2g17190.1 68415.m01985 ubiquitin family protein contains
           INTERPRO:IPR000626 ubiquitin domain
          Length = 538

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 33/58 (56%), Positives = 51/58 (87%)
 Frame = +1

Query: 82  LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHDRALSNLESI 255
           +I +NPQM++L+ RNPE+ H+LN+P +LRQT+E ARNP +++E+MR+ DRA+SN+ES+
Sbjct: 188 MIMNNPQMRELVDRNPELGHVLNDPSILRQTLEAARNPELMREMMRNTDRAMSNIESM 245



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 20/76 (26%)
 Frame = +3

Query: 255 PGGYNALQRMYRDIQEPMLNVA--SSMAG-----NPFSGLVDNSDGT------------- 374
           P G+N L+RMY ++QEP++N    S  AG     NPF+ L+ N   T             
Sbjct: 246 PEGFNMLRRMYENVQEPLMNATTMSENAGNNTSSNPFAALLGNQGVTTQGSDTSNNISAP 305

Query: 375 NPQQGSENRQPLPNPW 422
           N + G+ N  PLPNPW
Sbjct: 306 NAETGTPNANPLPNPW 321



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/45 (35%), Positives = 30/45 (66%)
 Frame = +1

Query: 82  LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELM 216
           L++ NPQ++ ++  NP++  M+ NP+ LRQ      +P M+Q++M
Sbjct: 394 LMSLNPQLRSMLDMNPQLREMMQNPDFLRQ----FSSPEMMQQMM 434



 Score = 36.3 bits (80), Expect = 0.018
 Identities = 12/26 (46%), Positives = 22/26 (84%)
 Frame = +2

Query: 5   NPDMLRQVLDNPLVQQMMNDPENMRT 82
           NP+M+R++++ P +Q +MN+PE MR+
Sbjct: 162 NPNMIREMMNTPAIQNLMNNPEFMRS 187



 Score = 31.5 bits (68), Expect = 0.51
 Identities = 11/37 (29%), Positives = 26/37 (70%)
 Frame = +1

Query: 82  LITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARN 192
           ++  NPQ++++M +NP+     ++PE+++Q M L ++
Sbjct: 404 MLDMNPQLREMM-QNPDFLRQFSSPEMMQQMMSLQQS 439



 Score = 31.1 bits (67), Expect = 0.67
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 85  ITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRS 222
           +  NP M   M   P I +++NNPE +R    +  NP M + + R+
Sbjct: 159 LAQNPNMIREMMNTPAIQNLMNNPEFMRSM--IMNNPQMRELVDRN 202



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/48 (27%), Positives = 27/48 (56%)
 Frame = +2

Query: 512 PGMQSLLQQMSENPRLVQSMVSSPYTNSMLQGLNA*PEMAS*LINQDP 655
           P ++   QQ+++NP +++ M+++P     +Q L   PE    +I  +P
Sbjct: 150 PDLEQAQQQLAQNPNMIREMMNTP----AIQNLMNNPEFMRSMIMNNP 193


>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
           to sti (stress inducible protein) [Glycine max]
           GI:872116; contains Pfam profile PF00515 TPR Domain
          Length = 571

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +1

Query: 97  PQMQDLMSRNPEISHMLNNPELLRQTMELARNPAMLQELMRSHD--RALSNLESIQVVTM 270
           P+M   ++ +P    +L  P+ +    E+ RNP+ L   ++     +AL  L +IQ+ T 
Sbjct: 135 PEMWSKLTADPSTRGLLKQPDFVNMMKEIQRNPSNLNLYLQDQRVMQALGVLLNIQIRTQ 194

Query: 271 RS 276
           ++
Sbjct: 195 QA 196


>At1g69450.1 68414.m07980 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 646

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +2

Query: 482 LRLRSRPHQTPG-MQSLLQQMSENPRLVQSMVSSP 583
           +R  SR   T G  +S+LQ+M +N RL Q+ VS+P
Sbjct: 192 MRFFSRKDNTEGHYESVLQEMEQNIRLGQAEVSAP 226


>At1g33820.1 68414.m04185 hypothetical protein
          Length = 182

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 169 QTMELARNPAMLQELMRSHDRALSNLESIQVVTM 270
           QTM +   P ML++   +H+R ++++E  Q + M
Sbjct: 12  QTMNMMIQPIMLKQSTTTHEREMTHIEDTQTMKM 45


>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
           finger (C3HC4-type RING finger) family protein (BRCA1)
           contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 213 DALTRP-RPLQSRKYPGGYNALQRMYRDIQEPMLNVASSMAGNPFSGLVDNSDGTNPQQG 389
           ++LT+P   +++ + P  Y     + R  + P LN   +++  PF  L D  DG N  Q 
Sbjct: 499 ESLTKPTESVETAEKPKDYTE-NTVIRLDEHPSLNKEGNLS--PFFWLRDEDDGENSSQR 555

Query: 390 SENRQPL 410
           +E+ Q L
Sbjct: 556 TESDQLL 562


>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
           protein Mei2-like protein, Arabidopsis thaliana,
           EMBL:D86122
          Length = 915

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 303 PMLNVASSMAGNPFSGLVDNSDGTNPQQGSENRQPLPN 416
           PM +   S  G P S  +DN +  +    SENR+  PN
Sbjct: 869 PMGSNIRSRPGKPRSSSIDNYNSFSISSVSENREETPN 906


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,008
Number of Sequences: 28952
Number of extensions: 297134
Number of successful extensions: 864
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)