Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30202
         (717 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    25   0.61 
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    25   0.61 
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   1.9  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   1.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.9  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   2.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.6  

>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 541 HQTAVSRELSCHVFVYLSLKSVSV--LNYVWV 452
           H+T + R +S   FVY+ L  ++   L YVW+
Sbjct: 127 HETNLLRNVSVQFFVYVILYILATVFLAYVWI 158


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 541 HQTAVSRELSCHVFVYLSLKSVSV--LNYVWV 452
           H+T + R +S   FVY+ L  ++   L YVW+
Sbjct: 127 HETNLLRNVSVQFFVYVILYILATVFLAYVWI 158


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 428 VRHGEEGDDPHIVEDRNRLKAKIDE 502
           +R  E+ +DPH+ E    L + IDE
Sbjct: 47  IRTSEDDNDPHVNEYVESLASIIDE 71


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 428 VRHGEEGDDPHIVEDRNRLKAKIDE 502
           +R  E+ +DPH+ E    L + IDE
Sbjct: 361 IRTSEDDNDPHVNEYVESLASIIDE 385


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 428 VRHGEEGDDPHIVEDRNRLKAKIDE 502
           +R  E+ +DPH+ E    L + IDE
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDE 618


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 428 VRHGEEGDDPHIVEDRNRLKAKIDE 502
           +R  E+ +DPH+ E    L + IDE
Sbjct: 594 IRTSEDDNDPHVNEYVESLASIIDE 618


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRN 618
           +A +V+S+ GPS+ P  +  E  +RN
Sbjct: 271 LASAVASANGPSQDPSISSTETLLRN 296


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 671 LLDPSGLGPAGDASLAAKF 615
           ++D S +GP+GD     KF
Sbjct: 661 IVDDSDVGPSGDCFYENKF 679


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,068
Number of Sequences: 336
Number of extensions: 3428
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)