Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30202
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.5  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   4.7  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   6.2  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   8.2  

>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 241 ETIRYFSLIRNDRRDMDGTGTPLTNR*YVGKIPV 140
           E+++YF L  ND   + G   P  +   +G IPV
Sbjct: 20  ESLKYFKLTSNDPMILSGFRGPRVSHLTIGMIPV 53


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 665 DPSGLGPAGDASLAAKFLTAGSSIASTGG 579
           +PSGLG  G   L+ K  T GS  +S  G
Sbjct: 126 NPSGLGTHGKVRLSIKLSTGGSGGSSVTG 154


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +1

Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPA 645
           +A  ++S   P +PP ++ ++P++ N    + SP+
Sbjct: 436 IAEGIASLLNPEEPPSNSDKQPSMSNGPKSEVSPS 470


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 493 DRRRHGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEE 603
           D++  G  V  RP  +VAPS + SR PS   V++  E
Sbjct: 298 DKKNPG-SVHIRPNNEVAPSSAPSRAPSTTSVESNTE 333


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 427 DTDYRKVSHIVLSEWRRH*QLWTRFLNTFIHI 332
           D +YR+ + ++L+  R     WT   + F HI
Sbjct: 197 DAEYRETNELLLTVTREWIDRWTEVCDAFQHI 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,534
Number of Sequences: 5004
Number of extensions: 57912
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)