Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30202
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0969 + 21331989-21332674,21333090-21333194,21333269-213333... 31 0.91
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413... 30 2.1
12_01_0969 - 9765114-9765664,9767963-9768512,9769507-9769561,976... 29 3.7
07_03_0471 + 18501496-18502104,18503009-18503260,18503367-185035... 29 3.7
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340... 29 3.7
09_06_0220 + 21644642-21647293 29 4.9
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790... 29 4.9
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350... 28 6.4
10_08_0995 - 22109824-22110104,22110865-22110986,22111204-22111298 28 8.5
05_03_0482 - 14568108-14568284,14568912-14569970,14570532-145712... 28 8.5
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124... 28 8.5
>04_03_0969 +
21331989-21332674,21333090-21333194,21333269-21333391,
21333458-21333628,21333710-21333839,21333926-21334135,
21334700-21334855
Length = 526
Score = 31.1 bits (67), Expect = 0.91
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 496 RRRHGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEEP--AVRNFAAKDASPA 645
RRR G+ V P +A +V+ + P KPP D E P A AA A PA
Sbjct: 48 RRRRGVAVAT-PVLHLATAVAPPKHPGKPPKDIQEVPSRAAAAAAAPKAQPA 98
>08_01_0469 -
4127950-4127988,4127989-4128264,4128845-4130861,
4131134-4131987
Length = 1061
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 680 ATYLLDPSGLGPAGDASLAAKFLTAGSSIASTGGLLGPREE 558
A Y +D + PAG A++ + L+ ++A G+ GP +E
Sbjct: 137 ARYTIDNIAINPAGPATVDPRLLSMYKTLAELVGIEGPMDE 177
>12_01_0969 -
9765114-9765664,9767963-9768512,9769507-9769561,
9769918-9769980,9770547-9771325
Length = 665
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 577 KPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYV 678
KPP P VR +A+ ASP P P ++ YV
Sbjct: 16 KPPPIRPRPPPVRPYASSAASPPPPPPPPASAYV 49
>07_03_0471 +
18501496-18502104,18503009-18503260,18503367-18503537,
18503693-18503743,18503868-18503960,18504125-18504220,
18504318-18504368,18504452-18504570,18504909-18505017,
18505391-18505513,18505590-18505661,18505963-18506034,
18506125-18506191,18506260-18506402,18506494-18506565,
18506632-18506760,18507317-18507472,18507579-18507692,
18507791-18507889,18507974-18508051,18508402-18508536,
18509081-18509155,18509247-18509361,18509458-18509828,
18509903-18509965,18510049-18510120,18510285-18510413,
18510512-18510628,18510902-18511018
Length = 1289
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 544 APSVSSSRGPSKPPVDAIEEP--AVRNFAAKDASPAGPKPDGSNRYVAVA 687
+PS SS P PP DA ++P A R AS + P P S + A A
Sbjct: 75 SPSSSSWPPPPPPPPDASQDPDLAPREATTPPASSSSPSPRASAKARASA 124
>03_06_0399 -
33632811-33633107,33633236-33633385,33633705-33634029,
33635315-33635982,33636967-33637212,33637405-33637545,
33637807-33637856,33637943-33638060,33638304-33638910,
33639339-33639463,33639813-33639869,33639952-33640023,
33640100-33640232,33640305-33640428,33640522-33640576,
33640672-33641322
Length = 1272
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +1
Query: 547 PSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPN 699
P V S PS PP ++E + F + +P+ P P + A P+
Sbjct: 41 PVVGSPPPPSPPPPPPLDEETLAQFPSPPTNPSPPPPPPLDADAAAEAAPS 91
>09_06_0220 + 21644642-21647293
Length = 883
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 377 PPPLAQNDVGDFPVVGIVRHGEEGDDPHIVEDRNRLKAKIDEDMA 511
P P + D +FP +V G EG + ++VE + + + E+ A
Sbjct: 377 PEPEEKVDDSEFPEFDVVDKGVEGQEENVVEAKGAAEEEAKEEKA 421
>01_07_0016 - 40476014-40476333,40476598-40476740,40476945-40479099,
40479205-40480047,40480176-40480269,40480356-40481207,
40481367-40481437,40481750-40481821,40481977-40482019
Length = 1530
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/45 (28%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 541 VAPSVSSSRGPS-KPPVDAIEEPAVRNFAAKDASPAGPKPDGSNR 672
++PS +S GPS + V + ++PA++ + A +++ GP G+ +
Sbjct: 1454 ISPSGTSVDGPSFREMVKSTKKPALQQYDASESADGGPGGKGAKK 1498
>05_01_0442 -
3500849-3500866,3500950-3501027,3501260-3501352,
3501419-3501536,3502815-3502945,3503027-3503299,
3504825-3504882,3505065-3505388,3507404-3507852,
3509514-3509554,3510263-3510412,3510519-3510906
Length = 706
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 710 SGSALGPIATATYLLDPSGLGPAGDASLAA 621
+ +A+G TA P G+GPAGDAS AA
Sbjct: 13 AAAAVGAAGTAG--ASPVGVGPAGDASAAA 40
>10_08_0995 - 22109824-22110104,22110865-22110986,22111204-22111298
Length = 165
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 496 RRRHGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVR 615
RRR M R + + P V+ RGP A+ EP V+
Sbjct: 9 RRRRSMGGRFRAEIQIDPGVAIPRGPDAGFAAAVREPLVK 48
>05_03_0482 -
14568108-14568284,14568912-14569970,14570532-14571236,
14571376-14571656,14571748-14571769
Length = 747
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 683 TATYLLDPSGLGPAGDASLAAKFLTAGSSIASTGGLLGPREEDTEGATS 537
TAT +P P GD LA F+ SI S G E++ + A++
Sbjct: 68 TATRPPEPLTSSPPGDPDLARLFVGLARSIRSVRAFFGHMEDNDDRASA 116
>03_05_0478 -
24712157-24712177,24712206-24712260,24712377-24712473,
24712558-24713302,24713822-24714189,24714279-24714419,
24715480-24715849
Length = 598
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSN 669
V P SSS P++PP A A AA A+ A + S+
Sbjct: 24 VTPDASSSAPPAEPPAAAAAAVAAAAAAASSAAAAAAQAQASS 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,591
Number of Sequences: 37544
Number of extensions: 391036
Number of successful extensions: 1415
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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