Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30202
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)          32   0.53 
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)              31   0.93 
SB_44458| Best HMM Match : Filament (HMM E-Value=1)                    30   2.2  
SB_7884| Best HMM Match : rve (HMM E-Value=2.1e-15)                    29   5.0  
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_44827| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_54710| Best HMM Match : Linker_histone (HMM E-Value=6e-38)
          Length = 234

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +1

Query: 514 KVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDAS--PAGPK 654
           K  ++P    +P  ++++ PSK P  A ++PA +  AAK A+  PA  K
Sbjct: 156 KAAKKPAAKKSPKKAAAKKPSKSPKKAAKKPAAKKPAAKKAAKKPAAKK 204


>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
          Length = 1230

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 526  RPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGP 651
            RPQ   AP     + P +PP   +++P ++ FA     P+ P
Sbjct: 888  RPQQPPAPMPPQQQSPYQPPAPTMQQPQLQAFAPFSPQPSQP 929


>SB_44458| Best HMM Match : Filament (HMM E-Value=1)
          Length = 748

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 362 PELLMPPPLAQNDVGDFPVVGIVRHGEEGDDPHIVEDRNRLKAKIDE 502
           P++ +PPPL   D+GD P+V      ++     I E R  L+   +E
Sbjct: 534 PKVPVPPPLQMPDIGDAPLVKDTSSAKDRKQKVIEELRGELRRAKNE 580


>SB_7884| Best HMM Match : rve (HMM E-Value=2.1e-15)
          Length = 813

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 162 QRFVNGVPVPSISRRSFRIREKYLIVSVLLTSE 260
           +RFV+G   PS+SR SF    K+ + S L T++
Sbjct: 222 RRFVSGSGAPSVSRESFYGDNKFALWSDLRTTD 254


>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 879

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = -2

Query: 272 LTTRFRRQKYRNNQIFLSYTERPPRYGRDGYPVNKPLIRR*NSRHVYQLLRIYT*YTKNI 93
           +TTR  R+ +  N+   +YT  PPR  R+ +          + R  Y   R  T   K  
Sbjct: 87  ITTRRTRKGFSRNESITNYTPSPPRTKRNTHAAKSRRDSLASYRSSYGASRAQT-KQKTK 145

Query: 92  NRDSSTHNRQP 60
           N+ S + + QP
Sbjct: 146 NKKSLSADSQP 156


>SB_44827| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 150 LPTYQRFVNGVPVPSISRRSFRIREKYLIVSVLLTSESCG*ELCFIYLNL 299
           + T ++ V  +PV  ISRR +  RE +    +L  +   G  LC++++ +
Sbjct: 31  ISTLRKVVFKLPVLRISRRFWNARENFKFAEILF-AFGLGQLLCYVFIEI 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,211,761
Number of Sequences: 59808
Number of extensions: 445317
Number of successful extensions: 1182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)