Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30202
(717 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC063835-1|AAH63835.1| 615|Homo sapiens VGF nerve growth factor... 33 1.4
BC044212-1|AAH44212.1| 377|Homo sapiens VGF protein protein. 33 1.4
AC004876-3|AAD45830.1| 615|Homo sapiens WUGSC:H_DJ0747G18.3 pro... 33 1.4
BC064990-1|AAH64990.1| 1147|Homo sapiens splicing factor, argini... 31 5.4
BC052286-1|AAH52286.1| 1147|Homo sapiens splicing factor, argini... 31 5.4
BC043353-1|AAH43353.1| 1146|Homo sapiens splicing factor, argini... 31 5.4
BC014921-1|AAH14921.1| 1147|Homo sapiens splicing factor, argini... 31 5.4
AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR pr... 31 5.4
U63809-1|AAC24947.1| 342|Homo sapiens prostate apoptosis respon... 30 7.2
>BC063835-1|AAH63835.1| 615|Homo sapiens VGF nerve growth factor
inducible protein.
Length = 615
Score = 32.7 bits (71), Expect = 1.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 511 MKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAI 690
++ L+RP APS S +GP + +A+ VR+ +P P+P R
Sbjct: 87 LQALDRPASPPAPS-GSQQGPEEEAAEALLTETVRSQTHSLPAPESPEPAAPPRPQTPEN 145
Query: 691 GPNA-DPDQ 714
GP A DP +
Sbjct: 146 GPEASDPSE 154
>BC044212-1|AAH44212.1| 377|Homo sapiens VGF protein protein.
Length = 377
Score = 32.7 bits (71), Expect = 1.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 511 MKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAI 690
++ L+RP APS S +GP + +A+ VR+ +P P+P R
Sbjct: 87 LQALDRPASPPAPS-GSQQGPEEEAAEALLTETVRSQTHSLPAPESPEPAAPPRPQTPEN 145
Query: 691 GPNA-DPDQ 714
GP A DP +
Sbjct: 146 GPEASDPSE 154
>AC004876-3|AAD45830.1| 615|Homo sapiens WUGSC:H_DJ0747G18.3
protein.
Length = 615
Score = 32.7 bits (71), Expect = 1.4
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 511 MKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAI 690
++ L+RP APS S +GP + +A+ VR+ +P P+P R
Sbjct: 87 LQALDRPASPPAPS-GSQQGPEEEAAEALLTETVRSQTHSLPAPESPEPAAPPRPQTPEN 145
Query: 691 GPNA-DPDQ 714
GP A DP +
Sbjct: 146 GPEASDPSE 154
>BC064990-1|AAH64990.1| 1147|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1147
Score = 30.7 bits (66), Expect = 5.4
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVA 687
VA +V+++ G PPV EP + A ++ PA P+ S+ + AVA
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEPPTQ--ATPNSVPAVPQLPSSDAFAAVA 190
>BC052286-1|AAH52286.1| 1147|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1147
Score = 30.7 bits (66), Expect = 5.4
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVA 687
VA +V+++ G PPV EP + A ++ PA P+ S+ + AVA
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEPPTQ--ATPNSVPAVPQLPSSDAFAAVA 190
>BC043353-1|AAH43353.1| 1146|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1146
Score = 30.7 bits (66), Expect = 5.4
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVA 687
VA +V+++ G PPV EP + A ++ PA P+ S+ + AVA
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEPPTQ--ATPNSVPAVPQLPSSDAFAAVA 190
>BC014921-1|AAH14921.1| 1147|Homo sapiens splicing factor,
arginine/serine-rich 15 protein.
Length = 1147
Score = 30.7 bits (66), Expect = 5.4
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVA 687
VA +V+++ G PPV EP + A ++ PA P+ S+ + AVA
Sbjct: 144 VAENVTNNEGSPPPPVKVSSEPPTQ--ATPNSVPAVPQLPSSDAFAAVA 190
>AF023142-1|AAD09327.1| 1157|Homo sapiens pre-mRNA splicing SR
protein rA4 protein.
Length = 1157
Score = 30.7 bits (66), Expect = 5.4
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +1
Query: 541 VAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVA 687
VA +V+++ G PPV EP + A ++ PA P+ S+ + AVA
Sbjct: 154 VAENVTNNEGSPPPPVKVSSEPPTQ--ATPNSVPAVPQLPSSDAFAAVA 200
>U63809-1|AAC24947.1| 342|Homo sapiens prostate apoptosis response
protein par-4 protein.
Length = 342
Score = 30.3 bits (65), Expect = 7.2
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Frame = +1
Query: 499 RRHGMKVLERPQFDVAPSVSSSRGPSKPPVDAIEEPAV-------RNF-AAKDASPAGPK 654
+R M+ + P P SS KPP A+ PA N A+PA P
Sbjct: 26 KREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGTPAAAAANELNNNLPGGAPAAPAVPG 85
Query: 655 PDGSNRYVAVAIGPNADP 708
P G N V A+ A P
Sbjct: 86 PGGVNCAVGSAMLTRAPP 103
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,927,971
Number of Sequences: 237096
Number of extensions: 2075410
Number of successful extensions: 5955
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5605
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5955
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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