Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30202
(717 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z93397-7|CAB07722.2| 483|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z93372-6|CAB07549.2| 483|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical pr... 29 2.5
U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associa... 28 5.8
AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three par... 28 5.8
AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin assoc... 28 5.8
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 28 7.7
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 28 7.7
>Z35719-1|CAA84800.1| 296|Caenorhabditis elegans Hypothetical
protein F17C8.2 protein.
Length = 296
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 568 GPSKP--PVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNADP 708
GP P P + +P A KD P P PDG + A GPN +P
Sbjct: 156 GPEGPAGPAGSDGQPGAPGDAGKDGPPGPPGPDGDSGPNGEA-GPNGEP 203
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 523 ERPQFDVAPSVSSS-RGPSKP-PVDAIEEPAVRNFAAKDASPAGPKPDG 663
E PQ V PS GP P PVD E+P ++D P+GP G
Sbjct: 131 EDPQPSVEPSEDHQPSGPPSPGPVDPSEDPQPSVEPSEDPQPSGPPSPG 179
>Z93397-7|CAB07722.2| 483|Caenorhabditis elegans Hypothetical
protein ZC482.5 protein.
Length = 483
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 568 LEKKIQKVQHQTAVSRE-LSCHVFVYLSLKSVSVLNYVWVV 449
L + KV H TA+ L+C VF++ ++ +V+NY +V
Sbjct: 305 LRTDLPKVSHSTALDVYILTCFVFLFAAMVEYAVINYAQIV 345
>Z93372-6|CAB07549.2| 483|Caenorhabditis elegans Hypothetical
protein ZC482.5 protein.
Length = 483
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 568 LEKKIQKVQHQTAVSRE-LSCHVFVYLSLKSVSVLNYVWVV 449
L + KV H TA+ L+C VF++ ++ +V+NY +V
Sbjct: 305 LRTDLPKVSHSTALDVYILTCFVFLFAAMVEYAVINYAQIV 345
>Z75955-2|CAB00112.1| 355|Caenorhabditis elegans Hypothetical
protein R07B7.3 protein.
Length = 355
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 293 QVNKTELLTTRFRRQKYRNNQIFLSYTERPPRYGRDGYPVNKPLIR 156
+V +T + RF+RQ R Q + ++PPR+ R P + ++R
Sbjct: 264 RVIQTPVAQQRFQRQPQRFQQQQPRFQQQPPRFQRQQQPQQQQVVR 309
>U28991-2|AAK68307.1| 679|Caenorhabditis elegans Kinesin-associated
protein protein1, isoform b protein.
Length = 679
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 430 NDTDYRKVSHIVLSEWRRH*QLWTRFLNTFIH--IVNTVIHTARTFKF 293
N+T ++ + +W++H ++ T +N FI VN + H + + F
Sbjct: 150 NETLMMALARVFREDWKKHFEVGTNIMNLFIGTLCVNAMEHETKRYDF 197
>AF003142-3|AAB54188.1| 739|Caenorhabditis elegans Him-three
paralog protein 3 protein.
Length = 739
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = -2
Query: 668 LDPSGLGPAGDASLAAKFLTAGSSIASTGGLLGP--REEDTEGATSNCGLSRTFMP 507
+DPSG PA + SSI G L +EDTE +T N S+ F P
Sbjct: 667 VDPSGAAPA---IATERHYGRVSSILDVAGSLSDVDPQEDTESSTQNQSTSKKFKP 719
>AB017107-1|BAA88838.1| 679|Caenorhabditis elegans Kinesin
associated protein kap-1 protein.
Length = 679
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -3
Query: 430 NDTDYRKVSHIVLSEWRRH*QLWTRFLNTFIH--IVNTVIHTARTFKF 293
N+T ++ + +W++H ++ T +N FI VN + H + + F
Sbjct: 150 NETLMMALARVFREDWKKHFEVGTNIMNLFIGTLCVNAMEHETKRYDF 197
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 159 YQRFVNGVPVPSISRRSFRIREKYLIVSVLLTSESC 266
Y RF+ G PVP+ + R + YL+ ++ S SC
Sbjct: 1358 YMRFIEGGPVPASYQDVDRSQMNYLMCNMGTVSPSC 1393
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +3
Query: 159 YQRFVNGVPVPSISRRSFRIREKYLIVSVLLTSESC 266
Y RF+ G PVP+ + R + YL+ ++ S SC
Sbjct: 1358 YMRFIEGGPVPASYQDVDRSQMNYLMCNMGTVSPSC 1393
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,563,504
Number of Sequences: 27780
Number of extensions: 335350
Number of successful extensions: 1036
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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