Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30202
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    26   0.31 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   6.7  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   8.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 514 SCHVFVYLSLKSVSVL-NYVWVVTFFAMPNDTD 419
           SC VFV+LSL   +V+ NY+  V   AM   +D
Sbjct: 282 SCSVFVFLSLMEFAVVNNYMGPVATKAMKGYSD 314


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = +3

Query: 54  RLGLTVV--CRTVSIYIFSILGV 116
           RL   VV  C T ++Y+ S++G+
Sbjct: 150 RLSFCVVLACSTATVYVMSVVGL 172


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 80  STHNRQPQSAVAIKLKSFQRRAA 12
           S+H+R  + AVA +L+  QR  A
Sbjct: 158 SSHSRSQEKAVAAELEDEQRLLA 180


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 653 LGPAGDASLAAKFLTAGSSIASTGGLLGPR 564
           LG    A   A  L  GSS  +   +LGPR
Sbjct: 176 LGAVDIAGSGAVHLVGGSSALACAIMLGPR 205


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 511 CHVFVYLSLKSVSVLNYVW 455
           C VFV+ +L   + +NY +
Sbjct: 311 CFVFVFAALLEYAAVNYTY 329


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 617 TSQLKTHLLLVLNQTGLIDTSLLLSV 694
           T QLK ++  +  Q GL+D    LS+
Sbjct: 66  TRQLKCYMYCLWEQFGLVDDKRELSL 91


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +2

Query: 434 HGEEGDDPH 460
           HG+EG+DP+
Sbjct: 84  HGKEGEDPY 92


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 179 GTRPVHISAVVPYKREISD 235
           G  P+H      Y REISD
Sbjct: 926 GFGPIHYGVCSNYLREISD 944


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,533
Number of Sequences: 438
Number of extensions: 4607
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)