Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30202
(717 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608... 30 1.3
At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608... 30 1.3
At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identic... 30 1.3
At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identic... 30 1.3
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain... 29 2.3
At5g55770.1 68418.m06951 DC1 domain-containing protein contains ... 29 3.1
At5g54650.2 68418.m06805 formin homology 2 domain-containing pro... 29 3.1
At5g54650.1 68418.m06804 formin homology 2 domain-containing pro... 29 3.1
At2g40220.1 68415.m04946 abscisic acid-insensitive 4 (ABI4) iden... 29 4.1
At1g24520.1 68414.m03087 anther-specific protein agp1 identical ... 29 4.1
>At3g51040.2 68416.m05589 expressed protein contains Pfam PF05608:
Protein of unknown function (DUF778)
Length = 231
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 589 QQEACWD--LEKKIQKVQHQTAVSRELSCHVFVYLSLKSVSVLNYVWVVTFFA 437
++E WD L K Q+ QH + +CH FV +L +S+ + W V A
Sbjct: 114 EKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLA 166
>At3g51040.1 68416.m05588 expressed protein contains Pfam PF05608:
Protein of unknown function (DUF778)
Length = 231
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 589 QQEACWD--LEKKIQKVQHQTAVSRELSCHVFVYLSLKSVSVLNYVWVVTFFA 437
++E WD L K Q+ QH + +CH FV +L +S+ + W V A
Sbjct: 114 EKEPTWDDALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSIKSGGWNVVNLA 166
>At2g23130.2 68415.m02759 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 162
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 544 APSVSSSRGPSKPPVDAIEE--PAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNAD 705
AP+ S+ P+K PV+A E P+ + SP P P+ ++ A I P+AD
Sbjct: 50 APTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPE-ADTPSAPEIAPSAD 104
>At2g23130.1 68415.m02760 arabinogalactan-protein (AGP17) identical
to gi_11935086_gb_AAG41963
Length = 185
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +1
Query: 544 APSVSSSRGPSKPPVDAIEE--PAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNAD 705
AP+ S+ P+K PV+A E P+ + SP P P+ ++ A I P+AD
Sbjct: 50 APTPESTEAPAKTPVEAPVEAPPSPTPASTPQISPPAPSPE-ADTPSAPEIAPSAD 104
>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
protein similar to transcription co-repressor Sin3
[Xenopus laevis] GI:4960210; contains Pfam profile
PF02671: Paired amphipathic helix repeat
Length = 1362
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 431 ERYRLQESLPHRFERVAEALTALDPLSEYVYTHCKHC 321
ERYR ++ R E+VA + P+SE ++C+ C
Sbjct: 432 ERYRERDREKERLEKVAASQKWAKPISELDLSNCEQC 468
>At5g55770.1 68418.m06951 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 695
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 705 ISVRTDSNSDVSIRPVWFRTSRRCVFSCEVPNSGLLYC 592
I +R NS +S RPV R +RRC F L+YC
Sbjct: 644 IFIRVHLNSSLS-RPVCSRCNRRCPFPIFFKGLRLIYC 680
>At5g54650.2 68418.m06805 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 544 APSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNA 702
AP + SS GP +PP A P + K P GPK G +++GP A
Sbjct: 376 APQMPSSAGPPRPPPPA---PPPGSGGPKPPPPPGPK--GPRPPPPMSLGPKA 423
>At5g54650.1 68418.m06804 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 900
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/53 (35%), Positives = 25/53 (47%)
Frame = +1
Query: 544 APSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNA 702
AP + SS GP +PP A P + K P GPK G +++GP A
Sbjct: 376 APQMPSSAGPPRPPPPA---PPPGSGGPKPPPPPGPK--GPRPPPPMSLGPKA 423
>At2g40220.1 68415.m04946 abscisic acid-insensitive 4 (ABI4)
identical to AP2 domain transcription factor ABI4
GI:4587996 from [Arabidopsis thaliana]; sucrose
uncoupled-6 (sun6) mutation PMID: 10972884
Length = 328
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +1
Query: 526 RPQFDVAPSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNAD 705
R Q ++ PS SS S V A P+ + + + P P+P + GP
Sbjct: 105 RAQLNLTPSSPSSVSSSSSSVSAASSPSTSSSSTQTLRPLLPRPAAATVGGGANFGPYGI 164
Query: 706 PDQN 717
P N
Sbjct: 165 PFNN 168
>At1g24520.1 68414.m03087 anther-specific protein agp1 identical to
agp1 GI:780177 from [Arabidopsis thaliana]
Length = 125
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 544 APSVSSSRGPSKPPVDAIEEPAVRNFAAKDASPAGPKPDGSNRYVAVAIGPNADPD 711
+PS S S+ P+ D +E P + A P P + VA +G ++ D
Sbjct: 28 SPSASPSKAPAASKTDHVEAPVTDDQIGTTDDDAAPTPGDGDVAVAGPLGSDSSYD 83
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,657,705
Number of Sequences: 28952
Number of extensions: 306436
Number of successful extensions: 889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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