Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30201
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    30   0.34 
SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.8  
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...    26   4.1  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.2  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/30 (43%), Positives = 21/30 (70%)
 Frame = -1

Query: 204  LYQYFHILLTY*LQLFKRNTITIRTKQPIL 115
            L  YFH+LL   L+L++RN ++I  K+ I+
Sbjct: 963  LADYFHMLLDPILRLYERNDVSIGIKESIM 992


>SPAC25H1.05 |meu29||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 540 HQQTSTHPAPCKWSPVLINFSSAIGVAVYHLSFNKLLIYSVTSI 409
           H Q +  P   KW+ V  N SS + V  Y++   K +  S+ SI
Sbjct: 66  HNQLNVAPHLLKWTCVWPNQSSHVEVIDYNIECKKTVALSMDSI 109


>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 426 YSVTSIWISHNENVRNIIMFGHFHLYLLIQKTQLSKYIP 310
           Y++  +W S N  +RNI+    F   +LI+   + KYIP
Sbjct: 96  YNLKKMWKSPNGTIRNILNGTVFREPILIK--NIPKYIP 132


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = -1

Query: 207  NLYQYFHILLTY*LQLFKRNTITIRTKQPILK 112
            N+ +Y H++L   ++ F+R+TI +  ++  LK
Sbjct: 961  NIEEYMHLVLPVIIRSFERDTIPLGFRKSALK 992


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +3

Query: 15   VNSQGILIFLNMFIIDKLIIEIVHKN*IDANFVLK*VV 128
            V  + +  F   F++DK+I  +V K+  + NF+ K VV
Sbjct: 1743 VGDKSVRPFFKAFLLDKVINPLVFKSCGENNFIDKDVV 1780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,401,442
Number of Sequences: 5004
Number of extensions: 47716
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)