Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30201
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0991 - 10057736-10058249,10058412-10059241,10059266-100606...    29   3.2  
01_06_1480 - 37660591-37660720,37660899-37660930,37661061-376611...    29   3.2  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    28   7.5  
09_02_0033 + 3145326-3145458,3146122-3146135,3146172-3146255,314...    27   9.9  

>12_01_0991 -
           10057736-10058249,10058412-10059241,10059266-10060633,
           10061785-10062327,10066274-10066498,10066590-10066640
          Length = 1176

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -1

Query: 498 PVLINFSSAIGVAVYHLSFNKLLIYSVTSIWISHNENVRNIIMFGHFHLYLLIQKTQLSK 319
           P L N S    + +   S+N+L  YSV   W+SH  ++++++M  H +L   +       
Sbjct: 442 PQLGNLSKLAYLDLTSYSYNQL--YSVALSWLSHLSSLKHLVM-NHVNLTTAVDWVDEIN 498

Query: 318 YIPQL 304
            +P L
Sbjct: 499 MLPAL 503


>01_06_1480 -
           37660591-37660720,37660899-37660930,37661061-37661155,
           37661460-37661527,37661608-37661694,37662884-37662912,
           37663019-37663138,37663854-37663905,37663986-37664050,
           37664174-37664536,37664637-37664711,37664803-37664940,
           37665025-37665181,37665471-37665478,37665576-37665710,
           37665965-37666082,37666791-37666915,37667571-37667717,
           37668297-37668380,37668671-37668800,37669196-37669347,
           37669678-37669857,37670660-37670731,37671104-37671295,
           37671366-37671411,37671498-37671647,37671725-37671882,
           37671995-37672101,37672191-37672407,37672484-37672696,
           37672852-37672972,37673072-37673253,37673475-37673672,
           37674770-37674967
          Length = 1447

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 492 LINFSSAIGVAVYHLSFNKLLIYSVTSIWISHNENVRNIIMFGHFHLYLLIQK 334
           L NF   + V   H  FN  +IY++  +  SH   + N +      L LL+ K
Sbjct: 631 LYNFCKVLSVKCSHSIFNWEMIYAILEVLFSHRNELTNHVE-AACDLLLLVSK 682


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -1

Query: 519 PAPCKWSPVLINFSSAIGVAVYHL--SFNKLLIYSVTSIWISHNENVRNIIMFG 364
           P P +W P   +F ++I + +  L  S + L  Y  TS+ ++ +   R ++  G
Sbjct: 537 PYPFQWGPPTFHFKTSIIMVIVSLVASVDSLSSYHATSLLVNLSPPTRGVVSRG 590


>09_02_0033 +
           3145326-3145458,3146122-3146135,3146172-3146255,
           3147330-3147406,3149093-3149516
          Length = 243

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 444 FNKLLIYSVTSIWISHNENVRN 379
           FN L+IY+   IW+  N+ V N
Sbjct: 192 FNGLIIYTTWGIWLQRNDQVFN 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,017,175
Number of Sequences: 37544
Number of extensions: 262584
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)