Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30200
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    29   3.2  
06_03_0493 + 21402536-21404599                                         29   5.6  
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053           28   9.7  

>04_04_0491 - 25605560-25605684,25605826-25605928,25606026-25607592,
            25608694-25610198
          Length = 1099

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = -2

Query: 430  GATVASGDLNCRTPLPTLALCR*ISELQLDDYRSTLST---CPLHKTVLLTSPLHKLPKI 260
            G   +SGD   R   PTL   +       + +  T +T   C  H T+L  S L  LPK+
Sbjct: 866  GDHTSSGDFQSRIAFPTLETLKFTDMESWEHWDETEATDFPCLRHLTILNCSKLTGLPKL 925

Query: 259  KHVVFVFVNYC 227
              +V + +  C
Sbjct: 926  LALVDLRIKNC 936


>06_03_0493 + 21402536-21404599
          Length = 687

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +1

Query: 115 CFCIIQLYVNIFGFYKSLIKKNVVANLLMPCAHVEGVCNSSRKRRQRVLF 264
           CFC        +G++ ++ ++ V+AN++     V+  C     R    LF
Sbjct: 267 CFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLF 316


>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
          Length = 1613

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 404  KLPHSTSNTSAMSVNLRTTT**LQVNTFNLSPTQDGAPYFSP 279
            K+   +  +S+ S   RT+     V TF +SP+ D  P+F P
Sbjct: 1212 KIRRLSIRSSSYSSAQRTSNSVAHVRTFRMSPSIDNIPFFFP 1253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,006
Number of Sequences: 37544
Number of extensions: 306996
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)