Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30200
         (788 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    29   5.7  

>SB_56578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1033

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 520  QLNTNTHASQVT*LTHVLTKYTSIHAR 600
            Q NTNTH S     TH L  YT +H++
Sbjct: 1002 QHNTNTHLSPTHRHTHYLPPYTFLHSQ 1028


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 516  NATKYKHARVSSNVTDSRTHKIHKYSCSLMPQSSTITDSP*GLELLYLL 662
            N+   K A+V S ++ S   K+    C LM + ++    P G ++ YL+
Sbjct: 1040 NSLSSKAAKVKSKISSSFFKKVTTVECRLMKKKNSDISLPFGSKIQYLI 1088


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,679,552
Number of Sequences: 59808
Number of extensions: 396486
Number of successful extensions: 651
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)