Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30200
         (788 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containi...    31   0.87 
At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putat...    30   1.5  
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr...    28   8.1  

>At1g62680.1 68414.m07074 pentatricopeptide (PPR) repeat-containing
           protein contains multiple PPR repeats Pfam Profile:
           PF01535
          Length = 542

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 148 FGFYKSLIKKNVVANLLMPCAHVEGVCNSSR 240
           F F+K + +K +  N++   A V G+CNSSR
Sbjct: 204 FDFFKEIERKGIRPNVVTYTALVNGLCNSSR 234


>At1g66610.1 68414.m07569 seven in absentia (SINA) protein, putative
           similar to SIAH1 protein [Brassica napus var. napus]
           GI:7657876; contains Pfam profile PF03145: Seven in
           absentia protein family
          Length = 366

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 151 GFYKSLIKKNVVANLLMPCAHVEGVCNSSRKRRQRV 258
           G Y+S I + VV   ++ C  V G  +SSR++R RV
Sbjct: 96  GNYRSRIMERVVEAFIVRCPIVAGEASSSRQKRLRV 131


>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 811

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 160 KSLIKKNVVANLLMPCAHVEGVCNSSRKRRQRV 258
           +SL   N   N+L+   +V  +C + RK RQRV
Sbjct: 110 QSLYLGNAETNILLALKNVREICRNIRKIRQRV 142


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,321
Number of Sequences: 28952
Number of extensions: 265597
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)