Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30199X
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    28   0.61 
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   1.4  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    26   1.9  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    26   2.5  
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual         25   3.3  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   4.3  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   4.3  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    25   5.7  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    25   5.7  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    25   5.7  
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    25   5.7  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   5.7  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    24   10.0 

>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 27.9 bits (59), Expect = 0.61
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -1

Query: 292 STVSISKNSAIIGLICPVQKYYSRIKIYHLWKSYSTICTVHVP*GHLSARGYT 134
           + V ++  S I GL  P     S   I+HLW ++S +   H+  G L A G T
Sbjct: 472 NVVFVANPSEIRGLHLP-----SITHIFHLWSTFSGVAYQHIA-GRLGAMGQT 518


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 203  VEELLNDLYGSCPLRPPIGEGLHYINLPHA 114
            +E+ +N+L G+     P G+ L ++NL HA
Sbjct: 1431 LEKQVNELKGAEVSPQPTGQSLQHVNLAHA 1460


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 329 WCRIEVGICSTHQYSVYF*K 270
           WCR+E+G  S    SV F K
Sbjct: 495 WCRVEIGCSSPQNISVSFEK 514


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 302 NKFQPQSDTIALYWKIGISRNPNPFQEYRPFSN 400
           N F PQ  +  +  ++  S   +P Q  RPF+N
Sbjct: 198 NNFSPQLRSPKISHRLQTSATSSPLQHKRPFTN 230


>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 413

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 260 YRSNMSSAKILFSYQNIPFVE 198
           YRSN S+++I F  +N P V+
Sbjct: 88  YRSNTSASEIHFQAENAPLVQ 108


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 204 CGRATQRFVRFMSLEATYR-RGATLHQPAPRP 112
           CGR   RFVR  S  AT       LH  +P P
Sbjct: 6   CGRLANRFVRLKSTSATSPITYKALHANSPLP 37


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 120 PRPAHYFSDVLMLGIIICMVFTTFKKIPLKRVYLVPFPVN 1
           P     FS+VL+  +I  + F     IPL R   +P   N
Sbjct: 614 PNSISSFSEVLLPNLISTLNFAPLSLIPLLRKSFLPLSYN 653


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -3

Query: 260 YRSNMSSAKILFSYQNIPFVEELLNDLYGSC 168
           +R+  +       ++NIP+  E L +L G C
Sbjct: 457 FRTKGNGPMCFVEFENIPYAMEALKNLQGVC 487


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/26 (30%), Positives = 20/26 (76%)
 Frame = -3

Query: 254 SNMSSAKILFSYQNIPFVEELLNDLY 177
           ++ ++A++LF ++N+P V   +N+L+
Sbjct: 390 ADRNAARVLFVHRNVPGVLRQVNELF 415


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 160 GHLSARGYTTSTCPTPRALLQRRLNARYHN 71
           GH++  GY  S  P   +L +  L AR HN
Sbjct: 501 GHINDLGYQMSLIPLLPSLARAVLAAREHN 530


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 278 NRHCTGAWNKFQPQSDTIALYWKIGISRNP 367
           N  C G W K   +   I L  K G  +NP
Sbjct: 61  NEECIGRWFKQTGRRKEIFLATKFGYEKNP 90


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 203 VEELLNDLYGSCPLRPPIGEG 141
           ++EL  ++   C +RPP+G+G
Sbjct: 467 IQELKGNIRVFCRVRPPLGDG 487


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 260 YRSNMSSAKILFSYQNIPFVEELLNDLYGSCP 165
           Y S ++   +     NIP V EL +D    CP
Sbjct: 394 YHSCVAVRPLFEELTNIPVVVELASDFVDRCP 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,308
Number of Sequences: 5004
Number of extensions: 39290
Number of successful extensions: 99
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)