Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30199X
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0945 - 22791754-22791863,22792295-22792367,22792457-227925... 29 1.8
07_03_0871 - 22183149-22183232,22183706-22183964,22184012-221840... 28 2.4
11_06_0679 - 26227654-26227770,26234067-26236217 28 3.1
02_05_0276 + 27378994-27380094,27380185-27380250,27380586-273806... 27 4.1
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 27 5.5
01_06_0483 + 29701674-29702180 27 7.2
08_02_0261 + 15001603-15002217 26 9.5
07_01_0008 - 56178-57095 26 9.5
01_05_0302 + 20637139-20637291,20637390-20637476,20637609-206378... 26 9.5
01_02_0074 + 10869546-10871373,10871449-10872077 26 9.5
>07_03_0945 -
22791754-22791863,22792295-22792367,22792457-22792552,
22793268-22793331,22793957-22794008,22794525-22794622,
22795108-22795166,22795981-22796013
Length = 194
Score = 28.7 bits (61), Expect = 1.8
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -1
Query: 343 PI*SYGVGLRLEFVPRTSTVSISKNSAIIGLICPVQKYYSRIK 215
P S VGLRL P +STV I S IG+ PV + I+
Sbjct: 6 PAISGEVGLRLLLAPLSSTVVIRTASCAIGVGLPVYSTFRAIE 48
>07_03_0871 -
22183149-22183232,22183706-22183964,22184012-22184091,
22184308-22184667,22184757-22184900,22184986-22185141,
22185236-22185401,22185480-22185512,22186188-22186270,
22186341-22186443,22186540-22186628
Length = 518
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 363 FLLIPIFQYRAMVSD*GW 310
FLLIP F Y A SD GW
Sbjct: 446 FLLIPAFYYTAKYSDQGW 463
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 27.9 bits (59), Expect = 3.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 193 YSTICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMY 65
YS C +H P GH +T C LL++ +N RY N Y
Sbjct: 628 YSKFCHIHGPGGH------STEECRQMTHLLEKHVN-RYENKY 663
>02_05_0276 +
27378994-27380094,27380185-27380250,27380586-27380660,
27381927-27382025,27382353-27382436,27382519-27382868,
27383190-27383406,27383579-27383658,27383760-27383850,
27386544-27386672,27388771-27388858,27389967-27390097
Length = 836
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 209 PFVEELLNDLYGSCPLRPPIGEGLHYINLPHAPRTT 102
P EELL + P+RP GEG+ ++LP TT
Sbjct: 718 PDSEELLEGAHTGSPMRPRGGEGV-AVSLPGETHTT 752
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 138 TLHQPAPRPAHYFSDVLMLGIIICMVF 58
T+HQP+ R H F VL+L C ++
Sbjct: 335 TIHQPSSRLYHMFDKVLLLSSDGCPIY 361
>01_06_0483 + 29701674-29702180
Length = 168
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = -2
Query: 183 FVRFMSLEATYRRGATLHQPAPRPAHYFSDVLMLGIIICMVFTTFKKIPLKRVYLVPFPV 4
F+ +SL R +L + +PR +H + V +L ++ ++FT + L+PFPV
Sbjct: 74 FLMLISLFCALRLFESLPRSSPRRSHVKAGVWVLSTVLTILFT------YRVAALMPFPV 127
>08_02_0261 + 15001603-15002217
Length = 204
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 188 NDLYGSCPLRPPIGEGLHY 132
N YGSC P +G LHY
Sbjct: 43 NQQYGSCATLPRLGATLHY 61
>07_01_0008 - 56178-57095
Length = 305
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 132 HQPAPRPAHYFSDVLMLGIIICMVFTTF 49
H+P P P HY+ + +L C TF
Sbjct: 222 HRPQPHPHHYYPWLSLLFAAACGAMLTF 249
>01_05_0302 +
20637139-20637291,20637390-20637476,20637609-20637836,
20638014-20638184,20638843-20638896,20639028-20639174,
20639326-20639706
Length = 406
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 200 PQMVYFDTRIVFLHWTY*TYNSTIFRNRHCTG 295
P M D +F++WT YN+T N C+G
Sbjct: 216 PAMYGDDKTRLFIYWTRDAYNTTGCYNLACSG 247
>01_02_0074 + 10869546-10871373,10871449-10872077
Length = 818
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 179 YGSCPLRPPIGEGLHYINLPHAPRTTSA 96
YG + P G GL Y N +A T +A
Sbjct: 649 YGGADVLYPFGHGLSYTNFTYASATAAA 676
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,714,020
Number of Sequences: 37544
Number of extensions: 244676
Number of successful extensions: 546
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -