Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30199X
         (400 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                26   9.8  

>SB_12741| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 910

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -1

Query: 157 HLSARGYTTSTCPTPRALLQRRLNARYHNMYG 62
           H+S  G  + T P  R L  R L  R  N YG
Sbjct: 700 HISPAGSISRTSPAARYLSDRGLTPREFNSYG 731


>SB_47865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1273

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -2

Query: 174 FMSLEATYRRGATLHQPAPRPAHYFSDVLM 85
           F S+ ATY  G  +++ +P P+ ++ +V++
Sbjct: 778 FESIRATYCVGHAMYKASPHPSGWYYEVIL 807


>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 929

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -1

Query: 244 PVQKYYSRIKIYHLWKSYSTICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMY 65
           P++  Y R+  YH W+S+ ++         + A+G   STC  P  +  +R+     +  
Sbjct: 67  PIRCRYLRLHPYH-WRSHISL--------RMEAKGCYISTCKRPLGMEDKRIRPGQLSAN 117

Query: 64  GFY 56
            FY
Sbjct: 118 NFY 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,342,379
Number of Sequences: 59808
Number of extensions: 269976
Number of successful extensions: 540
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)