Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30199X
         (400 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U05040-1|AAA17976.2|  644|Homo sapiens FUSE binding protein prot...    29   5.7  
BC017247-1|AAH17247.1|  653|Homo sapiens FUBP1 protein protein.        29   5.7  
AB209366-1|BAD92603.1|  493|Homo sapiens far upstream element-bi...    29   5.7  

>U05040-1|AAA17976.2|  644|Homo sapiens FUSE binding protein
           protein.
          Length = 644

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 251 NMSSAKILFSYQNIPFVEELLNDLYGSC--PLRPPIGEGLHYINLPHAP 111
           NM    I  + Q I +  +L+ +  G    PL PP+  G H +  PH P
Sbjct: 423 NMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGP 471


>BC017247-1|AAH17247.1|  653|Homo sapiens FUBP1 protein protein.
          Length = 653

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 251 NMSSAKILFSYQNIPFVEELLNDLYGSC--PLRPPIGEGLHYINLPHAP 111
           NM    I  + Q I +  +L+ +  G    PL PP+  G H +  PH P
Sbjct: 422 NMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGP 470


>AB209366-1|BAD92603.1|  493|Homo sapiens far upstream
           element-binding protein variant protein.
          Length = 493

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -3

Query: 251 NMSSAKILFSYQNIPFVEELLNDLYGSC--PLRPPIGEGLHYINLPHAP 111
           NM    I  + Q I +  +L+ +  G    PL PP+  G H +  PH P
Sbjct: 273 NMKLFTIRGTPQQIDYARQLIEEKIGGPVNPLGPPVPHGPHGVPGPHGP 321


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,744,788
Number of Sequences: 237096
Number of extensions: 1436882
Number of successful extensions: 2158
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2870859500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)