Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30199X
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t...    28   2.1  
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t...    28   2.1  
AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel...    28   2.1  
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel...    28   2.1  
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel...    28   2.1  
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel...    28   2.1  
AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical ...    28   2.8  
AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z70757-2|CAA94798.1|  611|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U58749-1|AAK18877.1|  238|Caenorhabditis elegans Hypothetical pr...    26   8.7  
DQ178244-1|ABA18183.1|  521|Caenorhabditis elegans putative sulf...    26   8.7  
AY954525-1|AAX34433.1|  611|Caenorhabditis elegans anion transpo...    26   8.7  
AY887917-1|AAX34429.1|  611|Caenorhabditis elegans anion transpo...    26   8.7  

>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1797

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 187 TICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMYGFY 56
           TI  + +P    +  G     CP P   +Q  LNA+    YG +
Sbjct: 236 TIMDLAIPDTMCAPEGIGGYECPAPMVCMQLNLNAKGEGFYGMF 279


>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1831

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 187 TICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMYGFY 56
           TI  + +P    +  G     CP P   +Q  LNA+    YG +
Sbjct: 236 TIMDLAIPDTMCAPEGIGGYECPAPMVCMQLNLNAKGEGFYGMF 279


>AF045640-7|AAU05589.1|  978|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           b protein.
          Length = 978

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 187 TICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMYGFY 56
           TI  + +P    +  G     CP P   +Q  LNA+    YG +
Sbjct: 294 TIMDLAIPDTMCAPEGIGGYECPAPMVCMQLNLNAKGEGFYGMF 337


>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           a protein.
          Length = 1562

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 187 TICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMYGFY 56
           TI  + +P    +  G     CP P   +Q  LNA+    YG +
Sbjct: 294 TIMDLAIPDTMCAPEGIGGYECPAPMVCMQLNLNAKGEGFYGMF 337


>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           c protein.
          Length = 1913

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 187 TICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMYGFY 56
           TI  + +P    +  G     CP P   +Q  LNA+    YG +
Sbjct: 294 TIMDLAIPDTMCAPEGIGGYECPAPMVCMQLNLNAKGEGFYGMF 337


>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 1, isoform
           d protein.
          Length = 1861

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 187 TICTVHVP*GHLSARGYTTSTCPTPRALLQRRLNARYHNMYGFY 56
           TI  + +P    +  G     CP P   +Q  LNA+    YG +
Sbjct: 266 TIMDLAIPDTMCAPEGIGGYECPAPMVCMQLNLNAKGEGFYGMF 309


>AC024772-5|AAF60539.1|  407|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4a protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 215 NIPFVEELLNDLYGSCPLRPPI 150
           NI FVEE+  D+   C   PPI
Sbjct: 5   NISFVEEVFEDIEDECAYSPPI 26


>AC024772-4|AAL32240.2|  441|Caenorhabditis elegans Hypothetical
           protein Y40C5A.4b protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 215 NIPFVEELLNDLYGSCPLRPPI 150
           NI FVEE+  D+   C   PPI
Sbjct: 5   NISFVEEVFEDIEDECAYSPPI 26


>Z82051-5|CAB04813.1|  216|Caenorhabditis elegans Hypothetical
           protein T23D5.8 protein.
          Length = 216

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
 Frame = +3

Query: 198 FHKWYILIRE*YFCTGHIRPIIALFLEIDTVLVRG-TNSNLNPTP*LYIGKLV*VGI 365
           FH WY LI   Y+CT    P       +  VL++    S    T  L+I  L   G+
Sbjct: 117 FHGWYYLIWVSYYCTHDTPPSDECIGGVGKVLLKAQKESRWTTTNNLHISNLSHTGL 173


>U58757-6|AAC47920.1|  656|Caenorhabditis elegans Hypothetical
           protein C01B10.8 protein.
          Length = 656

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 311 QPQSDTIALYWKIGISRNPNPFQEYRPFSN 400
           +PQS T   YWK   ++  +PF+ Y  +++
Sbjct: 6   EPQSFTDPAYWKNFFAKRKSPFEWYGDYNS 35


>Z70757-2|CAA94798.1|  611|Caenorhabditis elegans Hypothetical
           protein ZK287.2 protein.
          Length = 611

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 180 VRFMSLEATYRRGATLH-QPAPRPAHYFSDVLMLGIIICMVFTTFKKIPLKRVYLVP--F 10
           + F+ L  TY         P P P      +++ GI+I M+F    +  +K VY +P  F
Sbjct: 237 ILFLDLGRTYINPIVKKFSPIPPPLELI--LVIFGIVISMIFNLDAEYHVKTVYEIPRGF 294

Query: 9   PV 4
           P+
Sbjct: 295 PL 296


>U58749-1|AAK18877.1|  238|Caenorhabditis elegans Hypothetical
           protein B0496.6 protein.
          Length = 238

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -2

Query: 111 AHYFSDVLMLGIIICMVFTTFKKIPLKRVYLVPFPV 4
           AH+F++  ++GI + ++F    + P    + + FP+
Sbjct: 55  AHFFANSTLIGIPLLLIFVYPDEKPSDESFFIYFPI 90


>DQ178244-1|ABA18183.1|  521|Caenorhabditis elegans putative sulfate
           transporter prestinprotein.
          Length = 521

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 180 VRFMSLEATYRRGATLH-QPAPRPAHYFSDVLMLGIIICMVFTTFKKIPLKRVYLVP--F 10
           + F+ L  TY         P P P      +++ GI+I M+F    +  +K VY +P  F
Sbjct: 147 ILFLDLGRTYINPIVKKFSPIPPPLELI--LVIFGIVISMIFNLDAEYHVKTVYEIPRGF 204

Query: 9   PV 4
           P+
Sbjct: 205 PL 206


>AY954525-1|AAX34433.1|  611|Caenorhabditis elegans anion
           transporter SULP-8a protein.
          Length = 611

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 180 VRFMSLEATYRRGATLH-QPAPRPAHYFSDVLMLGIIICMVFTTFKKIPLKRVYLVP--F 10
           + F+ L  TY         P P P      +++ GI+I M+F    +  +K VY +P  F
Sbjct: 237 ILFLDLGRTYINPIVKKFSPIPPPLELI--LVIFGIVISMIFNLDAEYHVKTVYEIPRGF 294

Query: 9   PV 4
           P+
Sbjct: 295 PL 296


>AY887917-1|AAX34429.1|  611|Caenorhabditis elegans anion
           transporter SULP-8b protein.
          Length = 611

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 180 VRFMSLEATYRRGATLH-QPAPRPAHYFSDVLMLGIIICMVFTTFKKIPLKRVYLVP--F 10
           + F+ L  TY         P P P      +++ GI+I M+F    +  +K VY +P  F
Sbjct: 237 ILFLDLGRTYINPIVKKFSPIPPPLELI--LVIFGIVISMIFNLDAEYHVKTVYEIPRGF 294

Query: 9   PV 4
           P+
Sbjct: 295 PL 296


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,064,763
Number of Sequences: 27780
Number of extensions: 213984
Number of successful extensions: 520
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)