Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30199X
         (400 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g48050.1 68415.m06014 expressed protein ; expression supporte...    29   1.1  
At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibit...    27   3.5  
At5g17250.1 68418.m02021 phosphatidylinositolglycan class O (PIG...    27   4.6  
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein...    26   8.0  
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm...    26   8.0  
At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 fam...    26   8.0  

>At2g48050.1 68415.m06014 expressed protein ; expression supported
           by MPSS
          Length = 1500

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 183 FVRFMSLEATYRRGATLHQPAPRPAHYFSDVLMLGIIICMVFTTFKKIPLK 31
           F RF++        A L   +  P   F  V +LG++IC  F     IP K
Sbjct: 167 FERFLAWHGQKILFAALFYASLSPISVFGFVYLLGLVICTTFPKSSSIPSK 217


>At4g12390.1 68417.m01958 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Arabidopsis thaliana SP|Q42534, Lycopersicon esculentum
           SP|Q43143; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 206

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 395 KMAGIPGTD*DSYLYQFSNIELW 327
           K  G  G D D +L++ SN+E W
Sbjct: 129 KQVGRSGRDRDEFLWRLSNVETW 151


>At5g17250.1 68418.m02021 phosphatidylinositolglycan class O (PIG-O)
           family protein similar to Pig-o [Mus musculus]
           GI:8099973
          Length = 884

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 177 RFMSLEATYRRGATLHQPAPRPAHYFSDVLMLGIIICMVFTTFKKIPLKRVY 22
           +FMS   ++  G     PA   A   + +L + I+IC+++    K P + V+
Sbjct: 580 QFMSSSPSWMLGIAPDHPALTYAIEIAPILSVVILICVLYVAIAKAPNEGVW 631


>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 393

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -1

Query: 145 RGYTTSTCPTPRALLQRRLNARYH 74
           +G+   TCP  ++++ + ++ RYH
Sbjct: 298 KGHNRRTCPKSKSIVTKGISTRYH 321


>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
           to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
           finger) (2 copies)
          Length = 1254

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 97  RRLNARYHNMYGFYYI*ENSIETRIFSAIPSK 2
           R+   R+H ++GFY    N+ +  +F A+ SK
Sbjct: 696 RQFIGRFHLLWGFYKAHSNAEDDILFPALESK 727


>At2g32295.1 68415.m03948 EXS family protein / ERD1/XPR1/SYG1 family
           protein low similarity to xenotropic and polytropic
           murine leukemia virus receptor [Mustela vison]
           GI:6093316; contains Pfam profile PF03124: EXS family
          Length = 424

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 268 SAIIGLICPVQKYYSRIKIYHLWKSYSTICTVH 170
           SA+I LI P   +Y   + Y LW  +  +  VH
Sbjct: 137 SAVIILIIPFNIFYMSSRYYLLWTFWRILFPVH 169


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,470,021
Number of Sequences: 28952
Number of extensions: 198380
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)