BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30198 (520 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|... 139 2e-34 SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12... 139 2e-34 SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 31 0.10 SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 26 3.9 SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 26 3.9 SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 25 6.8 SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 25 6.8 SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 6.8 SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 25 6.8 SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 25 9.0 >SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual Length = 165 Score = 139 bits (337), Expect = 2e-34 Identities = 62/84 (73%), Positives = 76/84 (90%) Frame = +3 Query: 3 FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTV 182 FDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+LT+ Sbjct: 5 FDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTI 64 Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254 QNRQA ++VVPSA+AL+I+ALKEP Sbjct: 65 QNRQAAVSVVPSASALVIKALKEP 88 Score = 98.3 bits (234), Expect = 6e-22 Identities = 42/76 (55%), Positives = 63/76 (82%) Frame = +2 Query: 254 SRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPP 433 +RDRKK KN+ H+GN+SL+++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ P Sbjct: 89 ARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNP 148 Query: 434 HDLIDDINSGALTIDE 481 HD+ +I++G + I + Sbjct: 149 HDVQKEIDNGEIEIPQ 164 >SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual Length = 165 Score = 139 bits (337), Expect = 2e-34 Identities = 62/84 (73%), Positives = 76/84 (90%) Frame = +3 Query: 3 FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITVQLTV 182 FDPNE+K + +R VGGEV S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV+LT+ Sbjct: 5 FDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTVKLTI 64 Query: 183 QNRQAQIAVVPSAAALIIRALKEP 254 QNRQA ++VVPSA+AL+I+ALKEP Sbjct: 65 QNRQAAVSVVPSASALVIKALKEP 88 Score = 98.3 bits (234), Expect = 6e-22 Identities = 42/76 (55%), Positives = 63/76 (82%) Frame = +2 Query: 254 SRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPP 433 +RDRKK KN+ H+GN+SL+++I +A+ MR +S+A+ LSG+VKEILGTA SVGCTV+G+ P Sbjct: 89 ARDRKKDKNVAHSGNVSLDEIIEVARTMRFKSLAKELSGTVKEILGTAFSVGCTVDGKNP 148 Query: 434 HDLIDDINSGALTIDE 481 HD+ +I++G + I + Sbjct: 149 HDVQKEIDNGEIEIPQ 164 >SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 1687 Score = 31.1 bits (67), Expect = 0.10 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = -2 Query: 480 SSMVKAPLLMSSIRSCGGLPSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPI-TSSR 304 S++ + +LM S LPS + P V R+ ++PE DLFL I A+ + TSS+ Sbjct: 1447 SNICRITILMLSSPRDFFLPS-LPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSK 1505 Query: 303 EMLPL 289 +LPL Sbjct: 1506 HLLPL 1510 >SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 25.8 bits (54), Expect = 3.9 Identities = 14/49 (28%), Positives = 24/49 (48%) Frame = -2 Query: 423 PSTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPITSSREMLPLCLIF 277 P+ +P + PR T +R + + + P TSSR LPL +++ Sbjct: 213 PTESNPMFLSTPRFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMY 261 >SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 554 Score = 25.8 bits (54), Expect = 3.9 Identities = 10/28 (35%), Positives = 20/28 (71%) Frame = -1 Query: 490 KHLFINGQSSAVDVINKIMWRPALHSTS 407 K ++++ ++ A+D++NK M A+ STS Sbjct: 168 KTIYVSSETEALDILNKGMGSRAVASTS 195 >SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1958 Score = 25.0 bits (52), Expect = 6.8 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = -3 Query: 299 CCRCV*YFSAFYDHERLLKGSDDKG-CCRGNNSYLGLSVLNCQLHSDLETLPVT 141 C +C ++ DHE S G CC N+ + ++C++HS E ++ Sbjct: 121 CVKCF-RATSHKDHETSFTVSAGSGGCCDCGNAAAWIGDVSCKIHSHEEDATIS 173 >SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 500 Score = 25.0 bits (52), Expect = 6.8 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -1 Query: 70 DDVAPTSPPTHRKFTILI 17 D++A T PP HRK IL+ Sbjct: 249 DELAKTLPPYHRKNLILV 266 >SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharomyces pombe|chr 3|||Manual Length = 361 Score = 25.0 bits (52), Expect = 6.8 Identities = 8/36 (22%), Positives = 22/36 (61%) Frame = +3 Query: 201 IAVVPSAAALIIRALKEPLVIVKSRKISNTTATSPL 308 + + P++ ++ ++ EP +V++ + NT+ SP+ Sbjct: 234 LRLYPNSTCIVYQSSNEPNDVVRNFSVQNTSLFSPM 269 >SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 872 Score = 25.0 bits (52), Expect = 6.8 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +3 Query: 213 PSAAALIIRALKEPLVIVKSRKISNTTATS 302 PS A L+ RAL+ +++K ++SNTT +S Sbjct: 178 PSTAPLV-RALQTIELLLKKYEVSNTTKSS 206 >SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 24.6 bits (51), Expect = 9.0 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = +3 Query: 90 PLGLS--PKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 209 PLG+ PKK+ +++A+ G+K+T +VQ+ I V Sbjct: 381 PLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPV 422 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,240,399 Number of Sequences: 5004 Number of extensions: 45438 Number of successful extensions: 121 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 121 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 210309424 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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